Literature DB >> 1108007

Hydrogen bonding in yeast phenylalanine transfer RNA.

G J Quigley, A H Wang, N C Seeman, F L Suddath, A Rich, J L Sussman, S H Kim.   

Abstract

Further analysis of the three-dimensional electron density map of yeast phenylalanine tRNA is presented. Attention is focused on the several types of unique hydrogen bonding that are found in the molecule and a number of sections of the electron density map are presented. These sections are compared with an electron density map of a dinucleoside phosphate. The bases in the helical stem regions are all involved in Watson-Crick hydrogen bonding interactions with the exception of the guanine-uracil base pair. Several additional tertiary hydrogen bonding interactions are described.

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Year:  1975        PMID： 1108007      PMCID： PMC388833          DOI： 10.1073/pnas.72.12.4866

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  15 in total

1.  The molecular structure of polyadenylic acid.

Authors:  A RICH; D R DAVIES; F H CRICK; J D WATSON
Journal:  J Mol Biol       Date:  1961-02       Impact factor: 5.469

2.  Structure of yeast phenylalanine tRNA at 3 A resolution.

Authors:  J D Robertus; J E Ladner; J T Finch; D Rhodes; R S Brown; B F Clark; A Klug
Journal:  Nature       Date:  1974-08-16       Impact factor: 49.962

3.  Three-dimensional structure of yeast phenylalanine transfer RNA at 3.0angstroms resolution.

Authors:  F L Suddath; G J Quigley; A McPherson; D Sneden; J J Kim; S H Kim; A Rich
Journal:  Nature       Date:  1974-03-01       Impact factor: 49.962

4.  X-ray crystallographic studies of polymorphic forms of yeast phenylalanine transfer RNA.

Authors:  S H Kim; G Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  J Mol Biol       Date:  1973-04-05       Impact factor: 5.469

5.  The general structure of transfer RNA molecules.

Authors:  S H Kim; J L Sussman; F L Suddath; G J Quigley; A McPherson; A H Wang; N C Seeman; A RICH
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

6.  Detailed molecular model for transfer ribonucleic acid.

Authors:  M Levitt
Journal:  Nature       Date:  1969-11-22       Impact factor: 49.962

7.  Studies on polynucleotides. LXXXII. Yeast phenylalanine transfer ribonucleic acid: partial digestion with ribonuclease T-1 and derivation of the total primary structure.

Authors:  U L RajBhandary; S H Chang
Journal:  J Biol Chem       Date:  1968-02-10       Impact factor: 5.157

8.  Nucleic acid conformation: crystal structure of a naturally occurring dinucleoside phosphate (UpA).

Authors:  N C Seeman; J L Sussman; H N Berman; S H Kim
Journal:  Nat New Biol       Date:  1971-09-15

9.  High-resolution x-ray diffraction patterns of crystalline transfer RNA that show helical regions.

Authors:  S H Kim; G Quigley; F L Suddath; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

10.  Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain.

Authors:  S H Kim; G J Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  Science       Date:  1973-01-19       Impact factor: 47.728
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  30 in total

1.  Mass spectrometry-based quantification of pseudouridine in RNA.

Authors:  Balasubrahmanyam Addepalli; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-03       Impact factor: 3.109

2.  The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2'-O-methyltransferase activity.

Authors:  B C Persson; G Jäger; C Gustafsson
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

3.  1H NMR studies of transfer RNA III: the observed and the computed spectra of the hydrogen-bonded NH resonances of baker's yeast transfer-RNA Phe.

Authors:  L S Kan; P O Ts'o
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

4.  Surprising contribution to aminoacylation and translation of non-Watson-Crick pairs in tRNA.

Authors:  William H McClain
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

5.  A long-range RNA-RNA interaction forms a pseudoknot required for translational control of the IF3-L35-L20 ribosomal protein operon in Escherichia coli.

Authors:  C Chiaruttini; M Milet; M Springer
Journal:  EMBO J       Date:  1996-08-15       Impact factor: 11.598

6.  Comparison of tRNA conformation during different phases of reproduction.

Authors:  M Sarkar; M Vinayak
Journal:  Mol Biol Rep       Date:  1998-03       Impact factor: 2.316

Review 7.  Probing the structure of RNAs in solution.

Authors:  C Ehresmann; F Baudin; M Mougel; P Romby; J P Ebel; B Ehresmann
Journal:  Nucleic Acids Res       Date:  1987-11-25       Impact factor: 16.971

8.  Hydrogen-bonded protons in the tertiary structure of yeast tRNAPhe in solution.

Authors:  R Römer; V Varadi
Journal:  Proc Natl Acad Sci U S A       Date:  1977-04       Impact factor: 11.205

9.  CD spectra of 5-methyl-2-thiouridine in tRNA-Met-f from an extreme thermophile.

Authors:  K Watanabe; T Oshima; S Nishimura
Journal:  Nucleic Acids Res       Date:  1976-07       Impact factor: 16.971

10.  The kinetics of bisulphite modification of reactive residues in E. coli tRNA2Phe.

Authors:  M Lowdon; J P Goddard
Journal:  Nucleic Acids Res       Date:  1976-12       Impact factor: 16.971
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