Literature DB >> 15994900

Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations.

Henrike Heise1, Sorin Luca, Bert L de Groot, Helmut Grubmüller, Marc Baldus.   

Abstract

An approach is introduced to characterize conformational ensembles of intrinsically unstructured peptides on the atomic level using two-dimensional solid-state NMR data and their combination with molecular dynamics simulations. For neurotensin, a peptide that binds with high affinity to a G-protein coupled receptor, this method permits the investigation of the changes in conformational preferences of a neurotransmitter transferred from a frozen aqueous solution via a lipid model phase to the receptor-bound form. The results speak against a conformational pre-organization of the ligand in detergents in which the receptor has been shown to be functional. Further extensions to the study of protein folding are possible.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15994900      PMCID: PMC1366713          DOI: 10.1529/biophysj.105.059964

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

Review 1.  Membrane protein folding and stability: physical principles.

Authors:  S H White; W C Wimley
Journal:  Annu Rev Biophys Biomol Struct       Date:  1999

2.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

Review 3.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

4.  Structural constraints from proton-mediated rare-spin correlation spectroscopy in rotating solids.

Authors:  Adam Lange; Sorin Luca; Marc Baldus
Journal:  J Am Chem Soc       Date:  2002-08-21       Impact factor: 15.419

5.  Analysis of proton-proton transfer dynamics in rotating solids and their use for 3D structure determination.

Authors:  Adam Lange; Karsten Seidel; Laurent Verdier; Sorin Luca; Marc Baldus
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

Review 6.  From computer simulations to human disease: emerging themes in protein folding.

Authors:  S E Radford; C M Dobson
Journal:  Cell       Date:  1999-04-30       Impact factor: 41.582

7.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

8.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

9.  Essential dynamics of proteins.

Authors:  A Amadei; A B Linssen; H J Berendsen
Journal:  Proteins       Date:  1993-12

10.  Interfacial folding and membrane insertion of a designed helical peptide.

Authors:  Alexey S Ladokhin; Stephen H White
Journal:  Biochemistry       Date:  2004-05-18       Impact factor: 3.162

View more
  14 in total

1.  Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy.

Authors:  Ying Li; Aleksandra Z Kijac; Stephen G Sligar; Chad M Rienstra
Journal:  Biophys J       Date:  2006-08-11       Impact factor: 4.033

Review 2.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

3.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

4.  Spectral fitting for signal assignment and structural analysis of uniformly 13C-labeled solid proteins by simulated annealing based on chemical shifts and spin dynamics.

Authors:  Yoh Matsuki; Hideo Akutsu; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2007-07-06       Impact factor: 2.835

5.  Free-energy profiles of membrane insertion of the M2 transmembrane peptide from influenza A virus.

Authors:  In-Chul Yeh; Mark A Olson; Michael S Lee; Anders Wallqvist
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

6.  The micelle-associated 3D structures of Boc-Y(SO3)-Nle-G-W-Nle-D-2-phenylethylester (JMV-180) and CCK-8(s) share conformational elements of a calculated CCK1 receptor-bound model.

Authors:  Mohanraja Kumar; Joseph R Reeve; Weidong Hu; Laurence J Miller; David A Keire
Journal:  J Med Chem       Date:  2008-06-10       Impact factor: 7.446

7.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

Authors:  Vipin Agarwal; Mariana Sardo; Ingo Scholz; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

8.  NMR-based structural biology enhanced by dynamic nuclear polarization at high magnetic field.

Authors:  Eline J Koers; Elwin A W van der Cruijsen; Melanie Rosay; Markus Weingarth; Alexander Prokofyev; Claire Sauvée; Olivier Ouari; Johan van der Zwan; Olaf Pongs; Paul Tordo; Werner E Maas; Marc Baldus
Journal:  J Biomol NMR       Date:  2014-10-05       Impact factor: 2.835

9.  GPCR: Lock and key become flexible.

Authors:  Marc Baldus
Journal:  Nat Chem Biol       Date:  2018-02-14       Impact factor: 15.040

10.  Kinetic analysis of protein aggregation monitored by real-time 2D solid-state NMR spectroscopy.

Authors:  Manuel Etzkorn; Anja Böckmann; Marc Baldus
Journal:  J Biomol NMR       Date:  2011-01-21       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.