Literature DB >> 11536512

Oligomerization reactions of ribonucleotides: the reaction of the 5'-phosphorimidazolide of nucleosides on montmorillonite and other minerals.

J P Ferris1, G Ertem.   

Abstract

The reaction of ImpA in the presence of Na+ -montmorillonite 22A or Na+ -Volclay in aqueous, pH 8 solution gives a 50-60% yield of dimers and trimers (pA)2 and (pA)3. The ratio of 3',5'-phosphodiester bond formation is twice as great as 2',5'-bond formation. The reaction requires the presence of Mg2+ and is inhibited by 0.4 M imidazole. N-methylimidazole enhances the rate of the reaction but does not cause major changes in yield or product composition. Higher yields were obtained when Li+ -or Ca2+ -montmorillonites were used in place of Na+ -montmorillonite. Little or no phosphodiester bond formation was observed with Mg2+ - or Al3+ -montmorillonite. Montmorillonites other than 22A and Volclay exhibited little or no catalysis. In addition, little or no catalysis was exhibited in ferrugenous smectite, nontronite, allophane, imogolite or sepiolite. Oligomers were also formed by the reaction of ImpG, 2-methylImpG, ImpC and ImpU in the presence of Na+ -montmorillonite. The pyrimidine nucleotides gave significantly lower yields of oligomers.

Entities:  

Keywords:  NASA Discipline Exobiology; NASA Discipline Number 52-20; NASA Program Exobiology; Non-NASA Center

Mesh:

Substances:

Year:  1992        PMID: 11536512     DOI: 10.1007/bf01809373

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  18 in total

1.  Letter: Oligonucleotide synthesis catalyzed by the Zn-2+ ion.

Authors:  H Sawai; L E Orgel
Journal:  J Am Chem Soc       Date:  1975-06-11       Impact factor: 15.419

2.  Elemental abundance as a factor in the origins of mineral nutrient requirements.

Authors:  J H McClendon
Journal:  J Mol Evol       Date:  1976-08-03       Impact factor: 2.395

3.  Mineral catalysis of the formation of dimers of 5'-AMP in aqueous solution: the possible role of montmorillonite clays in the prebiotic synthesis of RNA.

Authors:  J P Ferris; G Ertem; V Agarwal
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

4.  RNA evolution and the origins of life.

Authors:  G F Joyce
Journal:  Nature       Date:  1989-03-16       Impact factor: 49.962

5.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

6.  The adsorption of nucleotides and polynucleotides on montmorillonite clay.

Authors:  J P Ferris; G Ertem; V K Agarwal
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

7.  Oligomerization reactions of deoxyribonucleotides on montmorillonite clay: the effect of mononucleotide structure on phosphodiester bond formation.

Authors:  J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1989       Impact factor: 1.950

8.  Oligomerization reactions of deoxyribonucleotides on montmorillonite clay: the effect of mononucleotide structure, phosphate activation and montmorillonite composition on phosphodiester bond formation.

Authors:  J P Ferris; G Ertem
Journal:  Orig Life Evol Biosph       Date:  1990       Impact factor: 1.950

9.  Chiral selection in poly(C)-directed synthesis of oligo(G).

Authors:  G F Joyce; G M Visser; C A van Boeckel; J H van Boom; L E Orgel; J van Westrenen
Journal:  Nature       Date:  1984 Aug 16-22       Impact factor: 49.962

10.  Formation of nucleoside 5'-phosphoramidates under potentially prebiological conditions.

Authors:  R Lohrmann
Journal:  J Mol Evol       Date:  1977-11-25       Impact factor: 2.395

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  22 in total

1.  Effect of inhibitors on the montmorillonite clay-catalyzed formation of RNA: studies on the reaction pathway.

Authors:  K J Wang; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  2001 Aug-Oct       Impact factor: 1.950

2.  Cations as mediators of the adsorption of nucleic acids on clay surfaces in prebiotic environments.

Authors:  Marco Franchi; James P Ferris; Enzo Gallori
Journal:  Orig Life Evol Biosph       Date:  2003-02       Impact factor: 1.950

3.  Catalysis and prebiotic RNA synthesis.

Authors:  J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

4.  The effect of smectite composition on the catalysis of peptide bond formation.

Authors:  J Bujdák; B M Rode
Journal:  J Mol Evol       Date:  1996-10       Impact factor: 2.395

5.  Oligomerization of uridine phosphorimidazolides on montmorillonite: a model for the prebiotic synthesis of RNA on minerals.

Authors:  P Z Ding; K Kawamura; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1996-04       Impact factor: 1.950

6.  Studies in the mineral and salt-catalyzed formation of RNA oligomers.

Authors:  Shin Miyakawa; Prakash C Joshi; Michael J Gaffey; Elena Gonzalez-Toril; Callen Hyland; Teresa Ross; Kristin Rybij; James P Ferris
Journal:  Orig Life Evol Biosph       Date:  2006-08-17       Impact factor: 1.950

Review 7.  The search for missing links between self-replicating nucleic acids and the RNA world.

Authors:  K D James; A D Ellington
Journal:  Orig Life Evol Biosph       Date:  1995-12       Impact factor: 1.950

8.  Applicability of PM3 to transphosphorylation reaction path: toward designing a minimal ribozyme.

Authors:  J I Manchester; M Shibata; R F Setlik; R L Ornstein; R Rein
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

9.  Clay catalysis of oligonucleotide formation: kinetics of the reaction of the 5'-phosphorimidazolides of nucleotides with the non-basic heterocycles uracil and hypoxanthine.

Authors:  K Kawamura; J P Ferris
Journal:  Orig Life Evol Biosph       Date:  1999-12       Impact factor: 1.950

10.  Montmorillonite, oligonucleotides, RNA and origin of life.

Authors:  Gözen Ertem
Journal:  Orig Life Evol Biosph       Date:  2004-12       Impact factor: 1.950

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