Literature DB >> 11509380

Structure of type I antifreeze protein and mutants in supercooled water.

S P Graether1, C M Slupsky, P L Davies, B D Sykes.   

Abstract

Many organisms are able to survive subzero temperatures at which bodily fluids would normally be expected to freeze. These organisms have adapted to these lower temperatures by synthesizing antifreeze proteins (AFPs), capable of binding to ice, which make further growth of ice energetically unfavorable. To date, the structures of five AFPs have been determined, and they show considerable sequence and structural diversity. The type I AFP reveals a single 37-residue alpha-helical structure. We have studied the behavior of wild-type type I AFP and two "inactive" mutants (Ala17Leu and Thr13Ser/Thr24Ser) in normal and supercooled solutions of H(2)O and deuterium oxide (D(2)O) to see if the structure at temperatures below the equilibrium freezing point is different from the structure observed at above freezing temperatures. Analysis of 1D (1)H- and (13)C-NMR spectra illustrate that all three proteins remain folded as the temperature is lowered and even seem to become more alpha-helical as evidenced by (13)C(alpha)-NMR chemical shift changes. Furthermore, (13)C-T(2) NMR relaxation measurements demonstrate that the rotational correlation times of all three proteins behave in a predictable manner under all temperatures and conditions studied. These data have important implications for the structure of the AFP bound to ice as well as the mechanisms for ice-binding and protein oligomerization.

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Year:  2001        PMID: 11509380      PMCID: PMC1301645          DOI: 10.1016/S0006-3495(01)75821-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

Review 1.  Molecular recognition and binding of thermal hysteresis proteins to ice.

Authors:  J D Madura; K Baran; A Wierzbicki
Journal:  J Mol Recognit       Date:  2000 Mar-Apr       Impact factor: 2.137

2.  Antifreeze Proteins: Structures and Mechanisms of Function.

Authors:  Yin Yeh; Robert E. Feeney
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

3.  A model for binding of an antifreeze polypeptide to ice.

Authors:  D Wen; R A Laursen
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

4.  A diminished role for hydrogen bonds in antifreeze protein binding to ice.

Authors:  H Chao; M E Houston; R S Hodges; C M Kay; B D Sykes; M C Loewen; P L Davies; F D Sönnichsen
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

Review 5.  Antifreeze proteins.

Authors:  P L Davies; B D Sykes
Journal:  Curr Opin Struct Biol       Date:  1997-12       Impact factor: 6.809

6.  Ice-binding structure and mechanism of an antifreeze protein from winter flounder.

Authors:  F Sicheri; D S Yang
Journal:  Nature       Date:  1995-06-01       Impact factor: 49.962

7.  New ice-binding face for type I antifreeze protein.

Authors:  J Baardsnes; L H Kondejewski; R S Hodges; H Chao; C Kay; P L Davies
Journal:  FEBS Lett       Date:  1999-12-10       Impact factor: 4.124

8.  Molecular dynamics simulation of winter flounder antifreeze protein variants in solution: correlation between side chain spacing and ice lattice.

Authors:  H Jorgensen; M Mori; H Matsui; M Kanaoka; H Yanagi; Y Yabusaki; Y Kikuzono
Journal:  Protein Eng       Date:  1993-01

9.  Structure-function relationships in a type I antifreeze polypeptide. The role of threonine methyl and hydroxyl groups in antifreeze activity.

Authors:  W Zhang; R A Laursen
Journal:  J Biol Chem       Date:  1998-12-25       Impact factor: 5.157

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  9 in total

1.  Freezing of a fish antifreeze protein results in amyloid fibril formation.

Authors:  Steffen P Graether; Carolyn M Slupsky; Brian D Sykes
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  Increased flexibility decreases antifreeze protein activity.

Authors:  Shruti N Patel; Steffen P Graether
Journal:  Protein Sci       Date:  2010-11-11       Impact factor: 6.725

3.  Fluorescence microscopy evidence for quasi-permanent attachment of antifreeze proteins to ice surfaces.

Authors:  Natalya Pertaya; Christopher B Marshall; Carlos L DiPrinzio; Larry Wilen; Erik S Thomson; J S Wettlaufer; Peter L Davies; Ido Braslavsky
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

4.  Antifreeze proteins at the ice/water interface: three calculated discriminating properties for orientation of type I proteins.

Authors:  Andrzej Wierzbicki; Pranav Dalal; Thomas E Cheatham; Jared E Knickelbein; A D J Haymet; Jeffry D Madura
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

Review 5.  NMR-based structural biology of proteins in supercooled water.

Authors:  Thomas Szyperski; Jeffrey L Mills
Journal:  J Struct Funct Genomics       Date:  2011-05-01

6.  Calcium interacts with antifreeze proteins and chitinase from cold-acclimated winter rye.

Authors:  Maja Stressmann; Satoshi Kitao; Marilyn Griffith; Christine Moresoli; León A Bravo; Alejandro G Marangoni
Journal:  Plant Physiol       Date:  2004-04-30       Impact factor: 8.340

7.  The role of side chain conformational flexibility in surface recognition by Tenebrio molitor antifreeze protein.

Authors:  Margaret E Daley; Brian D Sykes
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

Review 8.  Antifreeze peptides and glycopeptides, and their derivatives: potential uses in biotechnology.

Authors:  Jeong Kyu Bang; Jun Hyuck Lee; Ravichandran N Murugan; Sung Gu Lee; Hackwon Do; Hye Yeon Koh; Hye-Eun Shim; Hyun-Cheol Kim; Hak Jun Kim
Journal:  Mar Drugs       Date:  2013-06-10       Impact factor: 5.118

9.  Refolding of β-stranded class I chitinases of Hippophae rhamnoides enhances the antifreeze activity during cold acclimation.

Authors:  Ravi Gupta; Renu Deswal
Journal:  PLoS One       Date:  2014-03-13       Impact factor: 3.240

  9 in total

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