Literature DB >> 12824479

The role of side chain conformational flexibility in surface recognition by Tenebrio molitor antifreeze protein.

Margaret E Daley1, Brian D Sykes.   

Abstract

Two-dimensional nuclear magnetic resonance spectroscopy was used to investigate the flexibility of the threonine side chains in the beta-helical Tenebrio molitor antifreeze protein (TmAFP) at low temperatures. From measurement of the (3)J(alphabeta) (1)H-(1)H scalar coupling constants, the chi(1) angles and preferred rotamer populations can be calculated. It was determined that the threonines on the ice-binding face of the protein adopt a preferred rotameric conformation at near freezing temperatures, whereas the threonines not on the ice-binding face sample many rotameric states. This suggests that TmAFP maintains a preformed ice-binding conformation in solution, wherein the rigid array of threonines that form the AFP-ice interface matches the ice crystal lattice. A key factor in binding to the ice surface and inhibition of ice crystal growth appears to be the close surface-to-surface complementarity between the AFP and crystalline ice, and the lack of an entropic penalty associated with freezing out motions in a flexible ligand.

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Year:  2003        PMID: 12824479      PMCID: PMC2323928          DOI: 10.1110/ps.0369503

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  Folding and structural characterization of highly disulfide-bonded beetle antifreeze protein produced in bacteria.

Authors:  Y C Liou; M E Daley; L A Graham; C M Kay; V K Walker; B D Sykes; P L Davies
Journal:  Protein Expr Purif       Date:  2000-06       Impact factor: 1.650

2.  A model for binding of an antifreeze polypeptide to ice.

Authors:  D Wen; R A Laursen
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

3.  A diminished role for hydrogen bonds in antifreeze protein binding to ice.

Authors:  H Chao; M E Houston; R S Hodges; C M Kay; B D Sykes; M C Loewen; P L Davies; F D Sönnichsen
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

Review 4.  Antifreeze proteins.

Authors:  P L Davies; B D Sykes
Journal:  Curr Opin Struct Biol       Date:  1997-12       Impact factor: 6.809

5.  Binding of an oligopeptide to a specific plane of ice.

Authors:  M E Houston; H Chao; R S Hodges; B D Sykes; C M Kay; F D Sönnichsen; M C Loewen; P L Davies
Journal:  J Biol Chem       Date:  1998-05-08       Impact factor: 5.157

6.  Hyperactive antifreeze protein from beetles.

Authors:  L A Graham; Y C Liou; V K Walker; P L Davies
Journal:  Nature       Date:  1997-08-21       Impact factor: 49.962

Review 7.  Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Crit Rev Biochem Mol Biol       Date:  1989       Impact factor: 8.250

8.  Ice-binding structure and mechanism of an antifreeze protein from winter flounder.

Authors:  F Sicheri; D S Yang
Journal:  Nature       Date:  1995-06-01       Impact factor: 49.962

9.  New ice-binding face for type I antifreeze protein.

Authors:  J Baardsnes; L H Kondejewski; R S Hodges; H Chao; C Kay; P L Davies
Journal:  FEBS Lett       Date:  1999-12-10       Impact factor: 4.124

10.  Structure-function relationships in a type I antifreeze polypeptide. The role of threonine methyl and hydroxyl groups in antifreeze activity.

Authors:  W Zhang; R A Laursen
Journal:  J Biol Chem       Date:  1998-12-25       Impact factor: 5.157

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  6 in total

1.  Antifreeze protein-induced selective crystallization of a new thermodynamically and kinetically less preferred molecular crystal.

Authors:  Sen Wang; Xin Wen; James A Golen; Josh F Arifin; Arnold L Rheingold
Journal:  Chemistry       Date:  2013-10-09       Impact factor: 5.236

2.  Preordering of water is not needed for ice recognition by hyperactive antifreeze proteins.

Authors:  Arpa Hudait; Daniel R Moberg; Yuqing Qiu; Nathan Odendahl; Francesco Paesani; Valeria Molinero
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

3.  Thermodynamic stability of a cold-adapted protein, type III antifreeze protein, and energetic contribution of salt bridges.

Authors:  Olga García-Arribas; Roberto Mateo; Melanie M Tomczak; Peter L Davies; Mauricio G Mateu
Journal:  Protein Sci       Date:  2006-12-22       Impact factor: 6.725

4.  Trapping the tetrahedral intermediate in the alkaline phosphatase reaction by substitution of the active site serine with threonine.

Authors:  Jie Wang; Evan R Kantrowitz
Journal:  Protein Sci       Date:  2006-10       Impact factor: 6.725

5.  Comparison of backbone dynamics of the type III antifreeze protein and antifreeze-like domain of human sialic acid synthase.

Authors:  Yong-Geun Choi; Chin-Ju Park; Hee-Eun Kim; Yeo-Jin Seo; Ae-Ree Lee; Seo-Ree Choi; Shim Sung Lee; Joon-Hwa Lee
Journal:  J Biomol NMR       Date:  2015-01-10       Impact factor: 2.835

6.  Characterization of threonine side chain dynamics in an antifreeze protein using natural abundance 13C NMR spectroscopy.

Authors:  Margaret E Daley; Brian D Sykes
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

  6 in total

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