Literature DB >> 10535924

A protein residing at the subunit interface of the bacterial ribosome.

D E Agafonov1, V A Kolb, I V Nazimov, A S Spirin.   

Abstract

Surface labeling of Escherichia coli ribosomes with the use of the tritium bombardment technique has revealed a minor unidentified ribosome-bound protein (spot Y) that is hidden in the 70S ribosome and becomes highly labeled on dissociation of the 70S ribosome into subunits. In the present work, the N-terminal sequence of the protein Y was determined and its gene was identified as yfia, an ORF located upstream the phe operon of E. coli. This 12.7-kDa protein was isolated and characterized. An affinity of the purified protein Y for the 30S subunit, but not for the 50S ribosomal subunit, was shown. The protein proved to be exposed on the surface of the 30S subunit. The attachment of the 50S subunit resulted in hiding the protein Y, thus suggesting the protein location at the subunit interface in the 70S ribosome. The protein was shown to stabilize ribosomes against dissociation. The possible role of the protein Y as ribosome association factor in translation is discussed.

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Year:  1999        PMID: 10535924      PMCID: PMC22919          DOI: 10.1073/pnas.96.22.12345

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Proteins on ribosome surface: measurements of protein exposure by hot tritium bombardment technique.

Authors:  D E Agafonov; V A Kolb; A S Spirin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

2.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

Authors:  L P Gavrilova; O E Kostiashkina; V E Koteliansky; N M Rutkevitch; A S Spirin
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

3.  Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.

Authors:  H Schägger; G von Jagow
Journal:  Anal Biochem       Date:  1987-11-01       Impact factor: 3.365

4.  [Is there a channel for a peptide synthesized on a ribosome? Labeling of translating ribosomes with atomic tritium].

Authors:  V A Kolb; A A Kommer; A S Spirin
Journal:  Dokl Akad Nauk SSSR       Date:  1987

5.  A method to identify individual proteins in four different two-dimensional gel electrophoresis systems: application to Escherichia coli ribosomal proteins.

Authors:  J J Madjar; S Michel; A J Cozzone; J P Reboud
Journal:  Anal Biochem       Date:  1979-01-01       Impact factor: 3.365

6.  The ribosomal proteins of Escherichia coli. I. Purification of the 30S ribosomal proteins.

Authors:  S J Hardy; C G Kurland; P Voynow; G Mora
Journal:  Biochemistry       Date:  1969-07       Impact factor: 3.162

7.  Are there proteins between the ribosomal subunits? Hot tritium bombardment experiments.

Authors:  M M Yusupov; A S Spirin
Journal:  FEBS Lett       Date:  1986-03-03       Impact factor: 4.124

8.  Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes.

Authors:  P Matsudaira
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

9.  The use of thermally activated tritium atoms for structural-biological investigations: the topography of the TMV protein-accessible surface of the virus.

Authors:  V I Goldanskii; I A Kashirin; A V Shishkov; L A Baratova; N I Grebenshchikov
Journal:  J Mol Biol       Date:  1988-06-05       Impact factor: 5.469

10.  Nucleotide sequence and transcription of the phenylalanine and tyrosine operons of Escherichia coli K12.

Authors:  G S Hudson; B E Davidson
Journal:  J Mol Biol       Date:  1984-12-25       Impact factor: 5.469

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  34 in total

1.  Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage.

Authors:  D E Agafonov; V A Kolb; A S Spirin
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

2.  Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction.

Authors:  Geoff A Otto; Peter J Lukavsky; Alissa M Lancaster; Peter Sarnow; Joseph D Puglisi
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

3.  DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide.

Authors:  M Zheng; X Wang; L J Templeton; D R Smulski; R A LaRossa; G Storz
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

4.  Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation.

Authors:  Anthony R Cukras; Rachel Green
Journal:  J Mol Biol       Date:  2005-04-12       Impact factor: 5.469

5.  The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit.

Authors:  Laura Lancaster; Nicole J Lambert; Eric J Maklan; Lucas H Horan; Harry F Noller
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

6.  Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method.

Authors:  Dmitry E Agafonov; Jochen Deckert; Elmar Wolf; Peter Odenwälder; Sergey Bessonov; Cindy L Will; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2011-05-02       Impact factor: 4.272

7.  Characterization of hibernating ribosomes in mammalian cells.

Authors:  Dawid Krokowski; Francesca Gaccioli; Mithu Majumder; Michael R Mullins; Celvie L Yuan; Barbara Papadopoulou; William C Merrick; Anton A Komar; Derek Taylor; Maria Hatzoglou
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

8.  The Escherichia coli Cpx envelope stress response regulates genes of diverse function that impact antibiotic resistance and membrane integrity.

Authors:  Tracy L Raivio; Shannon K D Leblanc; Nancy L Price
Journal:  J Bacteriol       Date:  2013-04-05       Impact factor: 3.490

Review 9.  The bacterial translation stress response.

Authors:  Agata L Starosta; Jürgen Lassak; Kirsten Jung; Daniel N Wilson
Journal:  FEMS Microbiol Rev       Date:  2014-09-26       Impact factor: 16.408

10.  Involvement of cyclic AMP receptor protein in regulation of the rmf gene encoding the ribosome modulation factor in Escherichia coli.

Authors:  Tomohiro Shimada; Hideji Yoshida; Akira Ishihama
Journal:  J Bacteriol       Date:  2013-03-08       Impact factor: 3.490

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