Literature DB >> 21768774

Characterization of hibernating ribosomes in mammalian cells.

Dawid Krokowski1, Francesca Gaccioli, Mithu Majumder, Michael R Mullins, Celvie L Yuan, Barbara Papadopoulou, William C Merrick, Anton A Komar, Derek Taylor, Maria Hatzoglou.   

Abstract

Protein synthesis across kingdoms involves the assembly of 70S (prokaryotes) or 80S (eukaryotes) ribosomes on the mRNAs to be translated. 70S ribosomes are protected from degradation in bacteria during stationary growth or stress conditions by forming dimers that migrate in polysome profiles as 100S complexes. Formation of ribosome dimers in Escherichia coli is mediated by proteins, namely the ribosome modulation factor (RMF), which is induced in the stationary phase of cell growth. It is reported here a similar ribosomal complex of 110S in eukaryotic cells, which forms during nutrient starvation. The dynamic nature of the 110S ribosomal complex (mammalian equivalent of the bacterial 100S) was supported by the rapid conversion into polysomes upon nutrient-refeeding via a mechanism sensitive to inhibitors of translation initiation. Several experiments were used to show that the 110S complex is a dimer of nontranslating ribosomes. Cryo-electron microscopy visualization of the 110S complex revealed that two 80S ribosomes are connected by a flexible, albeit localized, interaction. We conclude that, similarly to bacteria, rat cells contain stress-induced ribosomal dimers. The identification of ribosomal dimers in rat cells will bring new insights in our thinking of the ribosome structure and its function during the cellular response to stress conditions.

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Year:  2011        PMID: 21768774      PMCID: PMC3219539          DOI: 10.4161/cc.10.16.16844

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  74 in total

1.  Pivotal role of the P1 N-terminal domain in the assembly of the mammalian ribosomal stalk and in the proteosynthetic activity.

Authors:  P Gonzalo; J P Lavergne; J P Reboud
Journal:  J Biol Chem       Date:  2001-03-26       Impact factor: 5.157

2.  Dynamic interaction of BiP and ER stress transducers in the unfolded-protein response.

Authors:  A Bertolotti; Y Zhang; L M Hendershot; H P Harding; D Ron
Journal:  Nat Cell Biol       Date:  2000-06       Impact factor: 28.824

3.  Expression of ribosome modulation factor (RMF) in Escherichia coli requires ppGpp.

Authors:  K Izutsu; A Wada; C Wada
Journal:  Genes Cells       Date:  2001-08       Impact factor: 1.891

4.  Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage.

Authors:  D E Agafonov; V A Kolb; A S Spirin
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

Review 5.  The acidic ribosomal P proteins.

Authors:  Marek Tchórzewski
Journal:  Int J Biochem Cell Biol       Date:  2002-08       Impact factor: 5.085

6.  Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit.

Authors:  A Garay-Arroyo; J M Colmenero-Flores; A Garciarrubio; A A Covarrubias
Journal:  J Biol Chem       Date:  2000-02-25       Impact factor: 5.157

7.  Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli.

Authors:  Y Maki; H Yoshida; A Wada
Journal:  Genes Cells       Date:  2000-12       Impact factor: 1.891

8.  A protein residing at the subunit interface of the bacterial ribosome.

Authors:  D E Agafonov; V A Kolb; I V Nazimov; A S Spirin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

9.  The GCN2 eIF2alpha kinase is required for adaptation to amino acid deprivation in mice.

Authors:  Peichuan Zhang; Barbara C McGrath; Jamie Reinert; DeAnne S Olsen; Li Lei; Sangeeta Gill; Sheree A Wek; Krishna M Vattem; Ronald C Wek; Scot R Kimball; Leonard S Jefferson; Douglas R Cavener
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

10.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

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  22 in total

1.  Coordinated Regulation of the Neutral Amino Acid Transporter SNAT2 and the Protein Phosphatase Subunit GADD34 Promotes Adaptation to Increased Extracellular Osmolarity.

Authors:  Dawid Krokowski; Raul Jobava; Bo-Jhih Guan; Kenneth Farabaugh; Jing Wu; Mithu Majumder; Massimiliano G Bianchi; Martin D Snider; Ovidio Bussolati; Maria Hatzoglou
Journal:  J Biol Chem       Date:  2015-06-03       Impact factor: 5.157

2.  Development, antibiotic production, and ribosome assembly in Streptomyces venezuelae are impacted by RNase J and RNase III deletion.

Authors:  Stephanie E Jones; Vivian Leong; Joaquin Ortega; Marie A Elliot
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

3.  Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress.

Authors:  Mridusmita Saikia; Dawid Krokowski; Bo-Jhih Guan; Pavel Ivanov; Marc Parisien; Guo-fu Hu; Paul Anderson; Tao Pan; Maria Hatzoglou
Journal:  J Biol Chem       Date:  2012-10-19       Impact factor: 5.157

4.  Dom34-Hbs1 mediated dissociation of inactive 80S ribosomes promotes restart of translation after stress.

Authors:  Antonia M G van den Elzen; Anthony Schuller; Rachel Green; Bertrand Séraphin
Journal:  EMBO J       Date:  2014-01-14       Impact factor: 11.598

Review 5.  eIF2α phosphorylation and the regulation of translation.

Authors:  Erik Boye; Beáta Grallert
Journal:  Curr Genet       Date:  2019-09-04       Impact factor: 3.886

6.  Ribosome Dimerization Protects the Small Subunit.

Authors:  Heather A Feaga; Mykhailo Kopylov; Jenny Kim Kim; Marko Jovanovic; Jonathan Dworkin
Journal:  J Bacteriol       Date:  2020-04-27       Impact factor: 3.490

7.  Regulation of eukaryotic translation initiation factor 6 dynamics through multisite phosphorylation by GSK3.

Authors:  Courtney F Jungers; Jonah M Elliff; Daniela S Masson-Meyers; Christopher J Phiel; Sofia Origanti
Journal:  J Biol Chem       Date:  2020-07-23       Impact factor: 5.157

8.  Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress.

Authors:  Yi-Hsuan Ho; Evgenia Shishkova; James Hose; Joshua J Coon; Audrey P Gasch
Journal:  Curr Biol       Date:  2018-08-02       Impact factor: 10.834

9.  Capturing the Asc1p/Receptor for Activated C Kinase 1 (RACK1) Microenvironment at the Head Region of the 40S Ribosome with Quantitative BioID in Yeast.

Authors:  Nadine Opitz; Kerstin Schmitt; Verena Hofer-Pretz; Bettina Neumann; Heike Krebber; Gerhard H Braus; Oliver Valerius
Journal:  Mol Cell Proteomics       Date:  2017-10-05       Impact factor: 5.911

Review 10.  Ribosome hibernation: a new molecular framework for targeting nonreplicating persisters of mycobacteria.

Authors:  Yunlong Li; Manjuli R Sharma; Ravi K Koripella; Nilesh K Banavali; Rajendra K Agrawal; Anil K Ojha
Journal:  Microbiology (Reading)       Date:  2021-02       Impact factor: 2.777

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