Literature DB >> 21045540

RNA remodeling and gene regulation by cold shock proteins.

Sangita Phadtare1, Konstantin Severinov.   

Abstract

One of the many important consequences that temperature down-shift has on cells is stabilization of secondary structures of RNAs. This stabilization has wide-spread effects, such as inhibition of expression of several genes due to termination of their transcription and inefficient RNA degradation that adversely affect cell growth at low temperature. Several cold shock proteins are produced to counteract these effects and thus allow cold acclimatization of the cell. The main RNA modulating cold shock proteins of E. coli can be broadly divided into two categories, (1) the CspA family proteins, which mainly affect the transcription and possibly translation at low temperature through their RNA chaperoning function and (2) RNA helicases and exoribonucleases that stimulate RNA degradation at low temperature through their RNA unwinding activity.

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Year:  2010        PMID: 21045540      PMCID: PMC3073336          DOI: 10.4161/rna.7.6.13482

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  123 in total

1.  Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli.

Authors:  K Yamanaka; M Inouye
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

2.  Interactions of the cold shock protein CspB from Bacillus subtilis with single-stranded DNA. Importance of the T base content and position within the template.

Authors:  M M Lopez; K Yutani; G I Makhatadze
Journal:  J Biol Chem       Date:  2001-01-29       Impact factor: 5.157

3.  CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coli.

Authors:  K Yamanaka; W Zheng; E Crooke; Y H Wang; M Inouye
Journal:  Mol Microbiol       Date:  2001-03       Impact factor: 3.501

4.  PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader.

Authors:  A C Jarrige; N Mathy; C Portier
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

5.  Ribosome-associated protein that inhibits translation at the aminoacyl-tRNA binding stage.

Authors:  D E Agafonov; V A Kolb; A S Spirin
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

6.  From polynucleotide phosphorylase to neurobiology.

Authors:  Uriel Z Littauer
Journal:  J Biol Chem       Date:  2005-11-25       Impact factor: 5.157

7.  Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coli.

Authors:  S Phadtare; M Inouye
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

8.  Induction of CspA, an E. coli major cold-shock protein, upon nutritional upshift at 37 degrees C.

Authors:  K Yamanaka; M Inouye
Journal:  Genes Cells       Date:  2001-04       Impact factor: 1.891

9.  Escherichia coli poly(A)-binding proteins that interact with components of degradosomes or impede RNA decay mediated by polynucleotide phosphorylase and RNase E.

Authors:  Y Feng; H Huang; J Liao; S N Cohen
Journal:  J Biol Chem       Date:  2001-06-04       Impact factor: 5.157

10.  Evidence against an Interaction between the mRNA downstream box and 16S rRNA in translation initiation.

Authors:  I Moll; M Huber; S Grill; P Sairafi; F Mueller; R Brimacombe; P Londei; U Bläsi
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

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  52 in total

Review 1.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

2.  S1 Domain RNA-Binding Protein CvfD Is a New Posttranscriptional Regulator That Mediates Cold Sensitivity, Phosphate Transport, and Virulence in Streptococcus pneumoniae D39.

Authors:  Dhriti Sinha; Jiaqi J Zheng; Ho-Ching Tiffany Tsui; John D Richardson; Nicholas R De Lay; Malcolm E Winkler
Journal:  J Bacteriol       Date:  2020-08-25       Impact factor: 3.490

3.  Cold shock induces chromosomal qnr in Vibrio species and plasmid-mediated qnrS1 in Escherichia coli.

Authors:  Hee-Chang Jang; Yin Wang; Chunhui Chen; Laura Vinué; George A Jacoby; David C Hooper
Journal:  Antimicrob Agents Chemother       Date:  2019-09-30       Impact factor: 5.191

Review 4.  Changing the energy habitat of the cancer cell in order to impact therapeutic resistance.

Authors:  Robert H Getzenberg; Donald S Coffey
Journal:  Mol Pharm       Date:  2011-09-29       Impact factor: 4.939

Review 5.  Proteins That Chaperone RNA Regulation.

Authors:  Sarah A Woodson; Subrata Panja; Andrew Santiago-Frangos
Journal:  Microbiol Spectr       Date:  2018-07

6.  CspA regulation of Staphylococcus aureus carotenoid levels and σB activity is controlled by YjbH and Spx.

Authors:  Niles P Donegan; Adhar C Manna; Ching Wen Tseng; George Y Liu; Ambrose L Cheung
Journal:  Mol Microbiol       Date:  2019-05-22       Impact factor: 3.501

7.  Characterization of RNA-Binding Motif 3 (RBM3) Protein Levels and Nuclear Architecture Changes in Aggressive and Recurrent Prostate Cancer.

Authors:  Neil M Carleton; Guangjing Zhu; M Craig Miller; Christine Davis; Prakash Kulkarni; Robert W Veltri
Journal:  Cancer Rep (Hoboken)       Date:  2020-01-29

8.  DarR, a TetR-like transcriptional factor, is a cyclic di-AMP-responsive repressor in Mycobacterium smegmatis.

Authors:  Lei Zhang; Weihui Li; Zheng-Guo He
Journal:  J Biol Chem       Date:  2012-12-17       Impact factor: 5.157

9.  Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm.

Authors:  Myung-Hee Kim; Yutaka Sonoda; Kentaro Sasaki; Hironori Kaminaka; Ryozo Imai
Journal:  Cell Stress Chaperones       Date:  2013-01-20       Impact factor: 3.667

10.  Response of Vibrio cholerae to Low-Temperature Shifts: CspV Regulation of Type VI Secretion, Biofilm Formation, and Association with Zooplankton.

Authors:  Loni Townsley; Marilou P Sison Mangus; Sanjin Mehic; Fitnat H Yildiz
Journal:  Appl Environ Microbiol       Date:  2016-06-30       Impact factor: 4.792

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