Literature DB >> 23379514

Small molecule antivirulents targeting the iron-regulated heme oxygenase (HemO) of P. aeruginosa.

Kellie Hom1, Geoffrey A Heinzl, Suntara Eakanunkul, Pedro E M Lopes, Fengtian Xue, Alexander D MacKerell, Angela Wilks.   

Abstract

Bacteria require iron for survin class="Chemical">val and virulence and employ several mechanisms including utilization of the host heme containing proteins. The final step in releasing iron is the oxidative cleavage of heme by HemO. A recent computer aided drug design (CADD) study identified several inhibitors of the bacterial HemOs. Herein we report the near complete HN, N, CO, Cα, and Cβ chemical shift assignment of the P. aeruginosa HemO in the absence and presence of inhibitors (E)-3-(4-(phenylamino)phenylcarbamoyl)acrylic acid (3) and (E)-N'-(4-(dimethylamino)benzylidene) diazenecarboximidhydrazide (5). The NMR data confirm that the inhibitors bind within the heme pocket of HemO consistent with in silico molecular dynamic simulations. Both inhibitors and the phenoxy derivative of 3 have activity against P. aeruginosa clinical isolates. Furthermore, 5 showed antimicrobial activity in the in vivo C. elegans curing assay. Thus, targeting virulence mechanisms required within the host is a viable antimicrobial strategy for the development of novel antivirulants.

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Year:  2013        PMID: 23379514      PMCID: PMC3643010          DOI: 10.1021/jm301819k

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  40 in total

1.  Comparison of the heme-free and -bound crystal structures of human heme oxygenase-1.

Authors:  Latesh Lad; David J Schuller; Hideaki Shimizu; Jonathan Friedman; Huiying Li; Paul R Ortiz de Montellano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2002-12-24       Impact factor: 5.157

2.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

Review 3.  A long journey from minimum inhibitory concentration testing to clinically predictive breakpoints: deterministic and probabilistic approaches in deriving breakpoints.

Authors:  A Dalhoff; P G Ambrose; J W Mouton
Journal:  Infection       Date:  2009-07-23       Impact factor: 3.553

4.  Imidazole-dioxolane compounds as isozyme-selective heme oxygenase inhibitors.

Authors:  Jason Z Vlahakis; Robert T Kinobe; Raymond J Bowers; James F Brien; Kanji Nakatsu; Walter A Szarek
Journal:  J Med Chem       Date:  2006-07-13       Impact factor: 7.446

5.  Homologues of neisserial heme oxygenase in gram-negative bacteria: degradation of heme by the product of the pigA gene of Pseudomonas aeruginosa.

Authors:  M Ratliff; W Zhu; R Deshmukh; A Wilks; I Stojiljkovic
Journal:  J Bacteriol       Date:  2001-11       Impact factor: 3.490

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Automation of the CHARMM General Force Field (CGenFF) II: assignment of bonded parameters and partial atomic charges.

Authors:  K Vanommeslaeghe; E Prabhu Raman; A D MacKerell
Journal:  J Chem Inf Model       Date:  2012-11-28       Impact factor: 4.956

8.  Heme uptake across the outer membrane as revealed by crystal structures of the receptor-hemophore complex.

Authors:  Stefanie Krieg; Frédéric Huché; Kay Diederichs; Nadia Izadi-Pruneyre; Anne Lecroisey; Cécile Wandersman; Philippe Delepelaire; Wolfram Welte
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-14       Impact factor: 11.205

9.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

10.  Structural basis for novel delta-regioselective heme oxygenation in the opportunistic pathogen Pseudomonas aeruginosa.

Authors:  Jonathan Friedman; Latesh Lad; Huiying Li; Angela Wilks; Thomas L Poulos
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

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  14 in total

1.  Tight binding of heme to Staphylococcus aureus IsdG and IsdI precludes design of a competitive inhibitor.

Authors:  Matthew A Conger; Deepika Pokhrel; Matthew D Liptak
Journal:  Metallomics       Date:  2017-05-24       Impact factor: 4.526

2.  Iminoguanidines as Allosteric Inhibitors of the Iron-Regulated Heme Oxygenase (HemO) of Pseudomonas aeruginosa.

Authors:  Geoffrey A Heinzl; Weiliang Huang; Wenbo Yu; Bennett J Giardina; Yue Zhou; Alexander D MacKerell; Angela Wilks; Fengtian Xue
Journal:  J Med Chem       Date:  2016-07-11       Impact factor: 7.446

3.  The Asp99-Arg188 salt bridge of the Pseudomonas aeruginosa HemO is critical in allowing conformational flexibility during catalysis.

Authors:  Geoffrey A Heinzl; Weiliang Huang; Elizabeth Robinson; Fengtian Xue; Pierre Moëne-Loccoz; Angela Wilks
Journal:  J Biol Inorg Chem       Date:  2018-09-08       Impact factor: 3.358

4.  Computer-Aided Drug Design Methods.

Authors:  Wenbo Yu; Alexander D MacKerell
Journal:  Methods Mol Biol       Date:  2017

Review 5.  Subversion of nutritional immunity by the pathogenic Neisseriae.

Authors:  Cynthia Nau Cornelissen
Journal:  Pathog Dis       Date:  2018-02-01       Impact factor: 3.166

6.  Extracellular haem utilization by the opportunistic pathogen Pseudomonas aeruginosa and its role in virulence and pathogenesis.

Authors:  Susana Mouriño; Angela Wilks
Journal:  Adv Microb Physiol       Date:  2021-08-13       Impact factor: 3.517

7.  Structure-based design and biological evaluation of inhibitors of the pseudomonas aeruginosa heme oxygenase (pa-HemO).

Authors:  Dongdong Liang; Elizabeth Robinson; Kellie Hom; Wenbo Yu; Nam Nguyen; Yue Li; Qianshou Zong; Angela Wilks; Fengtian Xue
Journal:  Bioorg Med Chem Lett       Date:  2018-02-14       Impact factor: 2.823

Review 8.  Iron acquisition in the cystic fibrosis lung and potential for novel therapeutic strategies.

Authors:  Jean Tyrrell; Máire Callaghan
Journal:  Microbiology (Reading)       Date:  2015-12-04       Impact factor: 2.777

Review 9.  Metallotherapeutics development in the age of iron-clad bacteria.

Authors:  Garrick Centola; Fengtian Xue; Angela Wilks
Journal:  Metallomics       Date:  2020-12-23       Impact factor: 4.526

10.  Inhibitors of TonB function identified by a high-throughput screen for inhibitors of iron acquisition in uropathogenic Escherichia coli CFT073.

Authors:  Alejandra Yep; Thomas McQuade; Paul Kirchhoff; Martha Larsen; Harry L T Mobley
Journal:  MBio       Date:  2014-02-25       Impact factor: 7.867

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