Literature DB >> 11160914

Measurement of 8-hydroxy-2'-deoxyguanosine in DNA by high-performance liquid chromatography-mass spectrometry: comparison with measurement by gas chromatography-mass spectrometry.

M Dizdaroglu1, P Jaruga, H Rodriguez.   

Abstract

Measurement of 8-hydroxy-2'-deoxyguanosine (8-OH-dGuo) in DNA by high-performance liquid chromatography/mass spectrometry (LC/MS) was studied. A methodology was developed for separation by LC of 8-OH-dGuo from intact and modified nucleosides in DNA hydrolyzed by a combination of four enzymes: DNase I, phosphodiesterases I and II and alkaline phosphatase. The atmospheric pressure ionization-electrospray process was used for mass spectral measurements. A stable isotope-labeled analog of 8-OH-dGuo was used as an internal standard for quantification by isotope-dilution MS (IDMS). Results showed that LC/IDMS with selected ion-monitoring (SIM) is well suited for identification and quantification of 8-OH-dGuo in DNA at background levels and in damaged DNA. The sensitivity level of LC/IDMS-SIM was found to be comparable to that reported previously using LC-tandem MS (LC/MS/MS). It was found that approximately five lesions per 10(6) DNA bases can be detected using amounts of DNA as low as 2 microgram. The results also suggest that this lesion may be quantified in DNA at levels of one lesion per 10(6) DNA bases, or even lower, when more DNA is used. Up to 50 microgram of DNA per injection were used without adversely affecting the measurements. Gas chromatography/isotope-dilution MS with selected-ion monitoring (GC/IDMS-SIM) was also used to measure this compound in DNA following its removal from DNA by acidic hydrolysis or by hydrolysis with Escherichia coli Fpg protein. The background levels obtained by LC/IDMS-SIM and GC/IDMS-SIM were almost identical. Calf thymus DNA and DNA isolated from cultured HeLa cells were used for this purpose. This indicates that these two techniques can provide similar results in terms of the measurement of 8-OH-dGuo in DNA. In addition, DNA in buffered aqueous solution was damaged by ionizing radiation at different radiation doses and analyzed by LC/IDMS-SIM and GC/IDMS-SIM. Again, similar results were obtained by the two techniques. The sensitivity of GC/MS-SIM for 7,8-dihydro-8-oxoguanine was also examined and found to be much greater than that of LC/MS-SIM and the reported sensitivity of LC/MS/MS for 8-OH-dGuo. Taken together, the results unequivocally show that LC/IDMS-SIM is well suited for sensitive and accurate measurement of 8-OH-dGuo in DNA and that both LC/IDMS-SIM and GC/IDMS-SIM can provide similar results.

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Year:  2001        PMID: 11160914      PMCID: PMC30413          DOI: 10.1093/nar/29.3.e12

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  32 in total

1.  Comparison of the levels of 8-hydroxyguanine in DNA as measured by gas chromatography mass spectrometry following hydrolysis of DNA by Escherichia coli Fpg protein or formic acid.

Authors:  H Rodriguez; J Jurado; J Laval; M Dizdaroglu
Journal:  Nucleic Acids Res       Date:  2000-08-01       Impact factor: 16.971

2.  Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry.

Authors:  P F Crain
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

3.  Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry.

Authors:  S C Pomerantz; J A McCloskey
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

4.  Radiation-induced DNA damage and its repair.

Authors:  R Téoule
Journal:  Int J Radiat Biol Relat Stud Phys Chem Med       Date:  1987-04

5.  Comparison of different methods of measuring 8-oxoguanine as a marker of oxidative DNA damage. ESCODD (European Standards Committee on Oxidative DNA Damage).

Authors: 
Journal:  Free Radic Res       Date:  2000-04

6.  The effect of experimental conditions on the levels of oxidatively modified bases in DNA as measured by gas chromatography-mass spectrometry: how many modified bases are involved? Prepurification or not?

Authors:  S Sentürker; M Dizdaroglu
Journal:  Free Radic Biol Med       Date:  1999-08       Impact factor: 7.376

7.  Formation of an 8-hydroxyguanine moiety in deoxyribonucleic acid on gamma-irradiation in aqueous solution.

Authors:  M Dizdaroglu
Journal:  Biochemistry       Date:  1985-07-30       Impact factor: 3.162

Review 8.  Chemical determination of free radical-induced damage to DNA.

Authors:  M Dizdaroglu
Journal:  Free Radic Biol Med       Date:  1991       Impact factor: 7.376

9.  Fast quantification of the urinary marker of oxidative stress 8-hydroxy-2'-deoxyguanosine using solid-phase extraction and high-performance liquid chromatography with triple-stage quadrupole mass detection.

Authors:  T Renner; T Fechner; G Scherer
Journal:  J Chromatogr B Biomed Sci Appl       Date:  2000-02-11

10.  Application of capillary gas chromatography-mass spectrometry to chemical characterization of radiation-induced base damage of DNA: implications for assessing DNA repair processes.

Authors:  M Dizdaroglu
Journal:  Anal Biochem       Date:  1985-02-01       Impact factor: 3.365

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  27 in total

1.  Biochemical identification of a hydroperoxide derivative of the free 8-oxo-7,8-dihydroguanine base.

Authors:  Gyorgy Hajas; Attila Bacsi; Leopoldo Aguilerra-Aguirre; Peter German; Zsolt Radak; Sanjiv Sur; Tapas K Hazra; Istvan Boldogh
Journal:  Free Radic Biol Med       Date:  2011-12-01       Impact factor: 7.376

Review 2.  Oxidative stress: changes in pregnancy and with gestational diabetes mellitus.

Authors:  Xinhua Chen; Theresa O Scholl
Journal:  Curr Diab Rep       Date:  2005-08       Impact factor: 4.810

Review 3.  Mass spectrometry of structurally modified DNA.

Authors:  Natalia Tretyakova; Peter W Villalta; Srikanth Kotapati
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

4.  DNA damage measurements within tissue samples with Repair Assisted Damage Detection (RADD).

Authors:  Kevin J Lee; Elise Mann; Luciana Madeira da Silva; Jennifer Scalici; Natalie R Gassman
Journal:  Curr Res Biotechnol       Date:  2019-11-15

5.  Absolute Quantification of RNA or DNA Using Acid Hydrolysis and Mass Spectrometry.

Authors:  Mark S Lowenthal; Eva Quittman; Karen W Phinney
Journal:  Anal Chem       Date:  2019-11-01       Impact factor: 6.986

Review 6.  Mitochondrial base excision repair assays.

Authors:  Scott Maynard; Nadja C de Souza-Pinto; Morten Scheibye-Knudsen; Vilhelm A Bohr
Journal:  Methods       Date:  2010-02-25       Impact factor: 3.608

7.  Bypass of a 5',8-cyclopurine-2'-deoxynucleoside by DNA polymerase β during DNA replication and base excision repair leads to nucleotide misinsertions and DNA strand breaks.

Authors:  Zhongliang Jiang; Meng Xu; Yanhao Lai; Eduardo E Laverde; Michael A Terzidis; Annalisa Masi; Chryssostomos Chatgilialoglu; Yuan Liu
Journal:  DNA Repair (Amst)       Date:  2015-06-17

8.  Cockayne syndrome group B protein stimulates repair of formamidopyrimidines by NEIL1 DNA glycosylase.

Authors:  Meltem Muftuoglu; Nadja C de Souza-Pinto; Arin Dogan; Maria Aamann; Tinna Stevnsner; Ivana Rybanska; Güldal Kirkali; Miral Dizdaroglu; Vilhelm A Bohr
Journal:  J Biol Chem       Date:  2009-01-29       Impact factor: 5.157

Review 9.  Emerging metrology for high-throughput nanomaterial genotoxicology.

Authors:  Bryant C Nelson; Christa W Wright; Yuko Ibuki; Maria Moreno-Villanueva; Hanna L Karlsson; Giel Hendriks; Christopher M Sims; Neenu Singh; Shareen H Doak
Journal:  Mutagenesis       Date:  2016-08-26       Impact factor: 3.000

10.  8-Oxoguanine DNA glycosylase-1 links DNA repair to cellular signaling via the activation of the small GTPase Rac1.

Authors:  Gyorgy Hajas; Attila Bacsi; Leopoldo Aguilera-Aguirre; Muralidhar L Hegde; K Hazra Tapas; Sanjiv Sur; Zsolt Radak; Xueqing Ba; Istvan Boldogh
Journal:  Free Radic Biol Med       Date:  2013-04-21       Impact factor: 7.376

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