Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.

Literature DB >> 10592243

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.

Abstract

ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. toulouse.inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

Mesh：

Substances：
Proteins

Year: 2000 PMID： 10592243 PMCID： PMC102458 DOI： 10.1093/nar/28.1.267

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

7 in total

1. Whole genome protein domain analysis using a new method for domain clustering.

Authors: J Gouzy; F Corpet; D Kahn
Journal: Comput Chem Date: 1999-06-15

2. Detecting protein function and protein-protein interactions from genome sequences.

Authors: E M Marcotte; M Pellegrini; H L Ng; D W Rice; T O Yeates; D Eisenberg
Journal: Science Date: 1999-07-30 Impact factor: 47.728

3. The PROSITE database, its status in 1999.

Authors: K Hofmann; P Bucher; L Falquet; A Bairoch
Journal: Nucleic Acids Res Date: 1999-01-01 Impact factor: 16.971

4. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.

Authors: A Bateman; E Birney; R Durbin; S R Eddy; R D Finn; E L Sonnhammer
Journal: Nucleic Acids Res Date: 1999-01-01 Impact factor: 16.971

5. Recent improvements of the ProDom database of protein domain families.

Authors: F Corpet; J Gouzy; D Kahn
Journal: Nucleic Acids Res Date: 1999-01-01 Impact factor: 16.971

Review 6. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors: S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal: Nucleic Acids Res Date: 1997-09-01 Impact factor: 16.971

7. Modular arrangement of proteins as inferred from analysis of homology.

Authors: E L Sonnhammer; D Kahn
Journal: Protein Sci Date: 1994-03 Impact factor: 6.725

7 in total

104 in total

1. Assessing clusters and motifs from gene expression data.

Authors: L M Jakt; L Cao; K S Cheah; D K Smith
Journal: Genome Res Date: 2001-01 Impact factor: 9.043

2. The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors: R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

3. The MetaFam Server: a comprehensive protein family resource.

Authors: K A Silverstein; E Shoop; J E Johnson; A Kilian; J L Freeman; T M Kunau; I A Awad; M Mayer; E F Retzel
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

4. The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Authors: J Murvai; K Vlahovicek; E Barta; S Pongor
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

5. Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.

Authors: R Apweiler; M Biswas; W Fleischmann; A Kanapin; Y Karavidopoulou; P Kersey; E V Kriventseva; V Mittard; N Mulder; I Phan; E Zdobnov
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971