Literature DB >> 10320404

The domain-server: direct prediction of protein domain-homologies from BLAST search.

J Murvai1, K Vlahovicek, E Barta, S Parthasarathy, H Hegyi, F Pfeiffer, S Pongor.   

Abstract

RESULTS: A WWW server for protein domain homology prediction, based on BLAST search and a simple data-mining algorithm (Hegyi,H. and Pongor,S. (1993) Comput. Appl. Biosci., 9, 371-372), was constructed providing a tabulated list and a graphic plot of similarities. AVAILABILITY: http://www.icgeb.trieste.it/domain. Mirror site is available at http://sbase.abc.hu/domain. A standalone programme will be available on request. SUPPLEMENTARY INFORMATION: A series of help files is available at the above addresses.

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Year:  1999        PMID： 10320404     DOI： 10.1093/bioinformatics/15.4.343

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; S Pongor
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Prediction of protein functional domains from sequences using artificial neural networks.

Authors:  J Murvai; K Vlahovicek; C Szepesvári; S Pongor
Journal:  Genome Res       Date:  2001-08       Impact factor: 9.043

4.  CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures.

Authors:  Kristian Vlahovicek; Alessandro Pintar; Laavanya Parthasarathi; Oliviero Carugo; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

5.  The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines.

Authors:  Kristian Vlahovicek; László Kaján; Vilmos Agoston; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

6.  Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification.

Authors:  Lőrinc S Pongor; Roberto Vera; Balázs Ligeti
Journal:  PLoS One       Date:  2014-07-31       Impact factor: 3.240
  6 in total

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