Literature DB >> 10592176

MIPS: a database for genomes and protein sequences.

H W Mewes1, D Frishman, C Gruber, B Geier, D Haase, A Kaps, K Lemcke, G Mannhaupt, F Pfeiffer, C Schüller, S Stocker, B Weil.   

Abstract

The Munich Information Center for Protein Sequences (MIPS-GSF), Martinsried, near Munich, Germany, continues its longstanding tradition to develop and maintain high quality curated genome databases. In addition, efforts have been intensified to cover the wealth of complete genome sequences in a systematic, comprehensive form. Bioinformatics, supporting national as well as European sequencing and functional analysis projects, has resulted in several up-to-date genome-oriented databases. This report describes growing databases reflecting the progress of sequencing the Arabidopsis thaliana (MATDB) and Neurospora crassa genomes (MNCDB), the yeast genome database (MYGD) extended by functional analysis data, the database of annotated human EST-clusters (HIB) and the database of the complete cDNA sequences from the DHGP (German Human Genome Project). It also contains information on the up-to-date database of complete genomes (PEDANT), the classification of protein sequences (ProtFam) and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database. These databases can be accessed through the MIPS WWW server (http://www. mips.biochem.mpg.de).

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Year:  2000        PMID: 10592176      PMCID: PMC102494          DOI: 10.1093/nar/28.1.37

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

Review 1.  Clearing a path through the jungle: progress in Arabidopsis genomics.

Authors:  M Bevan; I Bancroft; H W Mewes; R Martienssen; R McCombie
Journal:  Bioessays       Date:  1999-02       Impact factor: 4.345

Review 2.  From gene to screen with yeast.

Authors:  S G Oliver
Journal:  Curr Opin Genet Dev       Date:  1997-06       Impact factor: 5.578

3.  Superfamily classification in PIR-International Protein Sequence Database.

Authors:  W C Barker; F Pfeiffer; D G George
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

Review 4.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

Review 5.  The genome and genes of Neurospora crassa.

Authors:  A Radford; J H Parish
Journal:  Fungal Genet Biol       Date:  1997-06       Impact factor: 3.495

6.  An improved sequence assembly program.

Authors:  X Huang
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

Review 7.  Expanding yeast knowledge online.

Authors:  K Dolinski; C A Ball; S A Chervitz; S S Dwight; M A Harris; S Roberts; T Roe; J M Cherry; D Botstein
Journal:  Yeast       Date:  1998-12       Impact factor: 3.239

  7 in total
  64 in total

1.  The protein information resource (PIR).

Authors:  W C Barker; J S Garavelli; H Huang; P B McGarvey; B C Orcutt; G Y Srinivasarao; C Xiao; L S Yeh; R S Ledley; J F Janda; F Pfeiffer; H W Mewes; A Tsugita; C Wu
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.

Authors:  J Murvai; K Vlahovicek; E Barta; S Pongor
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.

Authors:  A Bernal; U Ear; N Kyrpides
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

4.  Biomechanical activation of vascular endothelium as a determinant of its functional phenotype.

Authors:  G Garcia-Cardeña; J Comander; K R Anderson; B R Blackman; M A Gimbrone
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

5.  HOBACGEN: database system for comparative genomics in bacteria.

Authors:  G Perrière; L Duret; M Gouy
Journal:  Genome Res       Date:  2000-03       Impact factor: 9.043

6.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

7.  Relating whole-genome expression data with protein-protein interactions.

Authors:  Ronald Jansen; Dov Greenbaum; Mark Gerstein
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

8.  Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.

Authors:  Soumya Raychaudhuri; Jeffrey T Chang; Patrick D Sutphin; Russ B Altman
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

9.  SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Authors:  P Bertone; Y Kluger; N Lan; D Zheng; D Christendat; A Yee; A M Edwards; C H Arrowsmith; G T Montelione; M Gerstein
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

10.  The SBASE protein domain library, release 9.0: an online resource for protein domain identification.

Authors:  Kristian Vlahovicek; János Murvai; Endre Barta; Sándor Pongor
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

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