Literature DB >> 18687869

Assignment-free solution NMR method reveals CesT as an unswapped homodimer.

Sigrun Rumpel1, Raghavendran Lakshmi, Stefan Becker, Markus Zweckstetter.   

Abstract

The X-ray structure of the homodimeric chaperone CesT is the only structure among the type three secretion system (TTSS) chaperones that shows a domain swap. This swap has potential importance for the mechanism of effector translocation through a TTSS. Here we present two nuclear magnetic resonance strategies exploiting pre-existing structural models and residual dipolar couplings (RDCs), which reveal the unswapped 35.4-kDa dimer to be present in solution. Particularly efficient is the discrimination of a swapped and unswapped structural state performed simultaneously to automatic backbone assignment using only HN-RDCs and carbonyl backbone chemical shifts. This direct approach may prove to be generally useful to rapidly differentiate two structural models.

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Year:  2008        PMID: 18687869      PMCID: PMC2578808          DOI: 10.1110/ps.036160.108

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  29 in total

Review 1.  3D domain swapping: as domains continue to swap.

Authors:  Yanshun Liu; David Eisenberg
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

2.  Prediction of charge-induced molecular alignment of biomolecules dissolved in dilute liquid-crystalline phases.

Authors:  Markus Zweckstetter; Gerhard Hummer; Ad Bax
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

Review 3.  Automated analysis of protein NMR assignments and structures.

Authors:  Michael C Baran; Yuanpeng J Huang; Hunter N B Moseley; Gaetano T Montelione
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

4.  Mars -- robust automatic backbone assignment of proteins.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

5.  Backbone assignment of proteins with known structure using residual dipolar couplings.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

6.  A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information.

Authors:  G M Clore; A M Gronenborn; A Bax
Journal:  J Magn Reson       Date:  1998-07       Impact factor: 2.229

Review 7.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

Review 8.  3D domain swapping: a mechanism for oligomer assembly.

Authors:  M J Bennett; M P Schlunegger; D Eisenberg
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

9.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

10.  Order matrix analysis of residual dipolar couplings using singular value decomposition.

Authors:  J A Losonczi; M Andrec; M W Fischer; J H Prestegard
Journal:  J Magn Reson       Date:  1999-06       Impact factor: 2.229

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  4 in total

1.  A novel C-terminal region within the multicargo type III secretion chaperone CesT contributes to effector secretion.

Authors:  Thangadurai Ramu; Madhulika Esther Prasad; Erica Connors; Amit Mishra; Jenny-Lee Thomassin; Jason Leblanc; Jan K Rainey; Nikhil A Thomas
Journal:  J Bacteriol       Date:  2012-12-07       Impact factor: 3.490

2.  Molecular basis of binding between the global post-transcriptional regulator CsrA and the T3SS chaperone CesT.

Authors:  Fei Ye; Fanli Yang; Ruijie Yu; Xi Lin; Jianxun Qi; Zhujun Chen; Yu Cao; Yuquan Wei; George F Gao; Guangwen Lu
Journal:  Nat Commun       Date:  2018-03-22       Impact factor: 14.919

3.  Molecular basis for CesT recognition of type III secretion effectors in enteropathogenic Escherichia coli.

Authors:  Dustin J Little; Brian K Coombes
Journal:  PLoS Pathog       Date:  2018-08-17       Impact factor: 6.823

4.  Amino-acid selective isotope labeling enables simultaneous overlapping signal decomposition and information extraction from NMR spectra.

Authors:  Takuma Kasai; Shunsuke Ono; Seizo Koshiba; Masayuki Yamamoto; Toshiyuki Tanaka; Shiro Ikeda; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2020-01-30       Impact factor: 2.835

  4 in total

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