Literature DB >> 11087744

Importance of barrier shape in enzyme-catalyzed reactions. Vibrationally assisted hydrogen tunneling in tryptophan tryptophylquinone-dependent amine dehydrogenases.

J Basran1, S Patel, M J Sutcliffe, N S Scrutton.   

Abstract

C-H bond breakage by tryptophan tryptophylquinone (TTQ)-dependent methylamine dehydrogenase (MADH) occurs by vibrationally assisted tunneling (Basran, J., Sutcliffe, M. J., and Scrutton, N. S. (1999) Biochemistry 38, 3218--3222). We show here a similar mechanism in TTQ-dependent aromatic amine dehydrogenase (AADH). The rate of TTQ reduction by dopamine in AADH has a large, temperature independent kinetic isotope effect (KIE = 12.9 +/- 0.2), which is highly suggestive of vibrationally assisted tunneling. H-transfer is compromised with benzylamine as substrate and the KIE is deflated (4.8 +/- 0.2). The KIE is temperature-independent, but reaction rates are strongly dependent on temperature. With tryptamine as substrate reaction rates can be determined only at low temperature as C-H bond cleavage is rapid, and an exceptionally large KIE (54.7 +/- 1.0) is observed. Studies with deuterated tryptamine suggest vibrationally assisted tunneling is the mechanism of deuterium and, by inference, hydrogen transfer. Bond cleavage by MADH using a slow substrate (ethanolamine) occurs with an inflated KIE (14.7 +/- 0.2 at 25 degrees C). The KIE is temperature-dependent, consistent with differential tunneling of protium and deuterium. Our observations illustrate the different modes of H-transfer in MADH and AADH with fast and slow substrates and highlight the importance of barrier shape in determining reaction rate.

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Year:  2000        PMID: 11087744     DOI: 10.1074/jbc.M008141200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  19 in total

1.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

2.  Arrhenius curves of hydrogen transfers: tunnel effects, isotope effects and effects of pre-equilibria.

Authors:  Hans-Heinrich Limbach; Juan Miguel Lopez; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 3.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Jiali Gao; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2005-05-12       Impact factor: 2.991

5.  Barrier compression and its contribution to both classical and quantum mechanical aspects of enzyme catalysis.

Authors:  Sam Hay; Linus O Johannissen; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

6.  An analysis of reaction pathways for proton tunnelling in methylamine dehydrogenase.

Authors:  Sara Nuñez; Gary Tresadern; Ian H Hillier; Neil A Burton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

7.  The Soybean Lipoxygenase-Substrate Complex: Correlation between the Properties of Tunneling-Ready States and ENDOR-Detected Structures of Ground States.

Authors:  Adam R Offenbacher; Ajay Sharma; Peter E Doan; Judith P Klinman; Brian M Hoffman
Journal:  Biochemistry       Date:  2020-02-05       Impact factor: 3.162

8.  An integrated model for enzyme catalysis emerges from studies of hydrogen tunneling.

Authors:  Judith P Klinman
Journal:  Chem Phys Lett       Date:  2009-03-26       Impact factor: 2.328

9.  Incorporating Fast Protein Dynamics into Enzyme Design: A Proposed Mutant Aromatic Amine Dehydrogenase.

Authors:  Ioanna Zoi; Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2017-07-19       Impact factor: 2.991

Review 10.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013
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