Literature DB >> 11042119

Role of non-covalent enzyme-substrate interactions in the reaction catalysed by cellobiose phosphorylase from Cellulomonas uda.

B Nidetzky1, C Eis, M Albert.   

Abstract

Steady-state kinetic studies of the enzymic glucosyl transfer to and from phosphate catalysed by cellobiose phosphorylase from Cellulomonas uda have shown that this enzyme operates by a ternary-complex kinetic mechanism in which beta-cellobiose binds before phosphate, and beta-D-glucose and alpha-D-glucopyranosyl phosphate are released in that order. alpha-D-Glucopyranosyl fluoride (but not beta-D-glucopyranosyl fluoride) serves as alternative glucosyl donor for beta-cellobiose synthesis with a specificity constant that is one-ninth that of the corresponding enzymic reaction with alpha-D-glucopyranosyl phosphate (approximately 20000 M(-1).s(-1) at 30 degrees C). The kinetic parameters for a complete series of deoxy and deoxyfluoro analogues of D-glucose have been determined and the data yield estimates of the net strengths of hydrogen-bonding interactions with the non-reacting hydroxy groups of D-glucose at the transition state (0.8-4.0 kcal/mol, where 1 cal identical with 4.184 J) and enable the prediction of the polarities of these hydrogen bonds. Each hydroxy group functions as donor of a hydrogen for bonding to probably a charged (at 3-OH) or neutral (at 2-OH and 6-OH) acceptor group on the enzyme. The equatorial 1-OH is essential for enzyme activity. Derivatives of D-glucose in which the 1-OH or the reacting 4-OH were replaced by hydrogen or fluorine have been tested as inhibitors to measure their affinities for the sugar-binding subsite +1 (numbered from the bond-cleaving/forming site). The data show that hydrogen-bonding interactions between the 1-OH and 4-OH and charged groups on the enzyme stabilize the ground-state ternary complex of the enzymic synthesis of beta-cellobiose by 2.3 and 0.4 kcal/mol, respectively, and assist the precise positioning of beta-D-glucose for catalysis.

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Year:  2000        PMID: 11042119      PMCID: PMC1221404     

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  34 in total

1.  Synthetic reaction of Cellvibrio gilvus cellobiose phosphorylase.

Authors:  M Kitaoka; T Sasaki; H Taniguchi
Journal:  J Biochem       Date:  1992-07       Impact factor: 3.387

Review 2.  The role of pyridoxal 5'-phosphate in glycogen phosphorylase catalysis.

Authors:  D Palm; H W Klein; R Schinzel; M Buehner; E J Helmreich
Journal:  Biochemistry       Date:  1990-02-06       Impact factor: 3.162

3.  Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis.

Authors:  A R Fersht
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4.  A cellobiose phosphorylase from Cellvibrio gilvus recognizes only the beta-D-form of 5a-carba-glucopyranose.

Authors:  M Kitaoka; S Ogawa; H Taniguchi
Journal:  Carbohydr Res       Date:  1993-09-02       Impact factor: 2.104

5.  Inhibition of phosphoglucomutase by vanadate.

Authors:  M D Percival; K Doherty; M J Gresser
Journal:  Biochemistry       Date:  1990-03-20       Impact factor: 3.162

6.  Substrate-induced activation of maltose phosphorylase: interaction with the anomeric hydroxyl group of alpha-maltose and alpha-D-glucose controls the enzyme's glucosyltransferase activity.

Authors:  Y Tsumuraya; C F Brewer; E J Hehre
Journal:  Arch Biochem Biophys       Date:  1990-08-15       Impact factor: 4.013

7.  Hydrogen bonding and specificity. Fluorodeoxy sugars as probes of hydrogen bonding in the glycogen phosphorylase-glucose complex.

Authors:  I P Street; C R Armstrong; S G Withers
Journal:  Biochemistry       Date:  1986-10-07       Impact factor: 3.162

8.  Inactivation of a beta-glucosidase through the accumulation of a stable 2-deoxy-2-fluoro-alpha-D-glucopyranosyl-enzyme intermediate: a detailed investigation.

Authors:  I P Street; J B Kempton; S G Withers
Journal:  Biochemistry       Date:  1992-10-20       Impact factor: 3.162

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Authors:  M A Tariq; K Hayashi
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10.  Binding energy and catalysis. Fluorinated and deoxygenated glycosides as mechanistic probes of Escherichia coli (lacZ) beta-galactosidase.

Authors:  J D McCarter; M J Adam; S G Withers
Journal:  Biochem J       Date:  1992-09-15       Impact factor: 3.857

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  13 in total

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2.  Crystallization and X-ray diffraction studies of cellobiose phosphorylase from Cellulomonas uda.

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3.  Structural dissection of the reaction mechanism of cellobiose phosphorylase.

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4.  Substrate-binding recognition and specificity of trehalose phosphorylase from Schizophyllum commune examined in steady-state kinetic studies with deoxy and deoxyfluoro substrate analogues and inhibitors.

Authors:  Christian Eis; Bernd Nidetzky
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5.  Characterization of three beta-galactoside phosphorylases from Clostridium phytofermentans: discovery of d-galactosyl-beta1->4-l-rhamnose phosphorylase.

Authors:  Masahiro Nakajima; Mamoru Nishimoto; Motomitsu Kitaoka
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6.  Reaction mechanism of chitobiose phosphorylase from Vibrio proteolyticus: identification of family 36 glycosyltransferase in Vibrio.

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Journal:  Biochem J       Date:  2004-01-01       Impact factor: 3.857

7.  Transcriptional analysis of biofilm formation processes in the anaerobic, hyperthermophilic bacterium Thermotoga maritima.

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8.  Identification of lacto-N-Biose I phosphorylase from Vibrio vulnificus CMCP6.

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Review 9.  Arsenic binding to proteins.

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Review 10.  Enzymatic synthesis using glycoside phosphorylases.

Authors:  Ellis C O'Neill; Robert A Field
Journal:  Carbohydr Res       Date:  2014-06-18       Impact factor: 2.104

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