Literature DB >> 20208178

Crystallization and X-ray diffraction studies of cellobiose phosphorylase from Cellulomonas uda.

Annelies Van Hoorebeke1, Jan Stout, John Kyndt, Manu De Groeve, Ina Dix, Tom Desmet, Wim Soetaert, Jozef Van Beeumen, Savvas N Savvides.   

Abstract

Disaccharide phosphorylases are able to catalyze both the synthesis and the breakdown of disaccharides and have thus emerged as attractive platforms for tailor-made sugar synthesis. Cellobiose phosphorylase from Cellulomonas uda (CPCuda) is an enzyme that belongs to glycoside hydrolase family 94 and catalyzes the reversible breakdown of cellobiose [beta-D-glucopyranosyl-(1,4)-D-glucopyranose] to alpha-D-glucose-1-phosphate and D-glucose. Crystals of ligand-free recombinant CPCuda and of its complexes with substrates and reaction products yielded complete X-ray diffraction data sets to high resolution using synchrotron radiation but suffered from significant variability in diffraction quality. In at least one case an intriguing space-group transition from a primitive monoclinic to a primitive orthorhombic lattice was observed during data collection. The structure of CPCuda was determined by maximum-likelihood molecular replacement, thus establishing a starting point for an investigation of the structural and mechanistic determinants of disaccharide phosphorylase activity.

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Year:  2010        PMID: 20208178      PMCID: PMC2833054          DOI: 10.1107/S1744309110002642

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

3.  Improved data acquisition in grazing-incidence X-ray scattering experiments using a pixel detector.

Authors:  C M Schlepütz; R Herger; P R Willmott; B D Patterson; O Bunk; Ch Brönnimann; B Henrich; G Hülsen; E F Eikenberry
Journal:  Acta Crystallogr A       Date:  2005-06-23       Impact factor: 2.290

4.  Creating lactose phosphorylase enzymes by directed evolution of cellobiose phosphorylase.

Authors:  Manu R M De Groeve; Miet De Baere; Lieve Hoflack; Tom Desmet; Erick J Vandamme; Wim Soetaert
Journal:  Protein Eng Des Sel       Date:  2009-05-31       Impact factor: 1.650

5.  Alpha-retaining glucosyl transfer catalysed by trehalose phosphorylase from Schizophyllum commune: mechanistic evidence obtained from steady-state kinetic studies with substrate analogues and inhibitors.

Authors:  B Nidetzky; C Eis
Journal:  Biochem J       Date:  2001-12-15       Impact factor: 3.857

6.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

7.  Chitobiose phosphorylase from Vibrio proteolyticus, a member of glycosyl transferase family 36, has a clan GH-L-like (alpha/alpha)(6) barrel fold.

Authors:  Masafumi Hidaka; Yuji Honda; Motomitsu Kitaoka; Satoru Nirasawa; Kiyoshi Hayashi; Takayoshi Wakagi; Hirofumi Shoun; Shinya Fushinobu
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

8.  Crystallization and preliminary X-ray analysis of thiaminase I from Bacillus thiaminolyticus: space group change upon freezing of crystals.

Authors:  N Campobasso; J Begun; C A Costello; T P Begley; S E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-05-01

9.  Purification and characterization of two phosphoglucomutases from Lactococcus lactis subsp. lactis and their regulation in maltose- and glucose-utilizing cells.

Authors:  N Qian; G A Stanley; B Hahn-Hägerdal; P Rådström
Journal:  J Bacteriol       Date:  1994-09       Impact factor: 3.490

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  9 in total

1.  Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.

Authors:  Young-Woo Nam; Takanori Nihira; Takatoshi Arakawa; Yuka Saito; Motomitsu Kitaoka; Hiroyuki Nakai; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2015-06-03       Impact factor: 5.157

Review 2.  β-Glucan phosphorylases in carbohydrate synthesis.

Authors:  Zorica Ubiparip; Marc De Doncker; Koen Beerens; Jorick Franceus; Tom Desmet
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-10       Impact factor: 4.813

3.  Biochemical properties of GH94 cellodextrin phosphorylase THA_1941 from a thermophilic eubacterium Thermosipho africanus TCF52B with cellobiose phosphorylase activity.

Authors:  Yuanyuan Wu; Guotao Mao; Haiyan Fan; Andong Song; Yi-Heng Percival Zhang; Hongge Chen
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

4.  Mechanistic insight into the substrate specificity of 1,2-β-oligoglucan phosphorylase from Lachnoclostridium phytofermentans.

Authors:  Masahiro Nakajima; Nobukiyo Tanaka; Nayuta Furukawa; Takanori Nihira; Yuki Kodutsumi; Yuta Takahashi; Naohisa Sugimoto; Akimasa Miyanaga; Shinya Fushinobu; Hayao Taguchi; Hiroyuki Nakai
Journal:  Sci Rep       Date:  2017-02-15       Impact factor: 4.379

5.  Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149.

Authors:  Sakonwan Kuhaudomlarp; Nicola J Patron; Bernard Henrissat; Martin Rejzek; Gerhard Saalbach; Robert A Field
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.486

6.  The structure of a GH149 β-(1 → 3) glucan phosphorylase reveals a new surface oligosaccharide binding site and additional domains that are absent in the disaccharide-specific GH94 glucose-β-(1 → 3)-glucose (laminaribiose) phosphorylase.

Authors:  Sakonwan Kuhaudomlarp; Clare E M Stevenson; David M Lawson; Robert A Field
Journal:  Proteins       Date:  2019-06-06

7.  Disaccharide phosphorylases: Structure, catalytic mechanisms and directed evolution.

Authors:  Shangshang Sun; Chun You
Journal:  Synth Syst Biotechnol       Date:  2021-02-13

8.  1,2-β-Oligoglucan phosphorylase from Listeria innocua.

Authors:  Masahiro Nakajima; Hiroyuki Toyoizumi; Koichi Abe; Hiroyuki Nakai; Hayao Taguchi; Motomitsu Kitaoka
Journal:  PLoS One       Date:  2014-03-19       Impact factor: 3.240

9.  Overcoming inefficient cellobiose fermentation by cellobiose phosphorylase in the presence of xylose.

Authors:  Kulika Chomvong; Vesna Kordić; Xin Li; Stefan Bauer; Abigail E Gillespie; Suk-Jin Ha; Eun Joong Oh; Jonathan M Galazka; Yong-Su Jin; Jamie H D Cate
Journal:  Biotechnol Biofuels       Date:  2014-06-07       Impact factor: 6.040

  9 in total

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