Literature DB >> 11032816

Human DNA ligase I efficiently seals nicks in nucleosomes.

D R Chafin1, J M Vitolo, L A Henricksen, R A Bambara, J J Hayes.   

Abstract

The access to DNA within nucleosomes is greatly restricted for most enzymes and trans-acting factors that bind DNA. We report here that human DNA ligase I, which carries out the final step of Okazaki fragment processing and of many DNA repair pathways, can access DNA that is wrapped about the surface of a nucleosome in vitro and carry out its enzymatic function with high efficiency. In addition, we find that ligase activity is not affected by the binding of linker histone (H1) but is greatly influenced by the disposition of the core histone tail domains. These results suggest that the window of opportunity for human DNA ligase I may extend well beyond the first stages of chromatin reassembly after DNA replication or repair.

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Year:  2000        PMID: 11032816      PMCID: PMC314012          DOI: 10.1093/emboj/19.20.5492

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  48 in total

Review 1.  The interaction of transcription factors with nucleosomal DNA.

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Journal:  Bioessays       Date:  1992-09       Impact factor: 4.345

2.  In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins.

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Journal:  Methods       Date:  1997-05       Impact factor: 3.608

3.  Repeat expansion--all in a flap?

Authors:  D A Gordenin; T A Kunkel; M A Resnick
Journal:  Nat Genet       Date:  1997-06       Impact factor: 38.330

Review 4.  Enzymes and reactions at the eukaryotic DNA replication fork.

Authors:  R A Bambara; R S Murante; L A Henricksen
Journal:  J Biol Chem       Date:  1997-02-21       Impact factor: 5.157

5.  Role of histone tails in nucleosome remodeling by Drosophila NURF.

Authors:  P T Georgel; T Tsukiyama; C Wu
Journal:  EMBO J       Date:  1997-08-01       Impact factor: 11.598

6.  Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone-dependent transcriptional repression.

Authors:  K Ura; H Kurumizaka; S Dimitrov; G Almouzni; A P Wolffe
Journal:  EMBO J       Date:  1997-04-15       Impact factor: 11.598

7.  Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation.

Authors:  K J Polach; J Widom
Journal:  J Mol Biol       Date:  1995-11-24       Impact factor: 5.469

8.  Linker histones H1 and H5 prevent the mobility of positioned nucleosomes.

Authors:  S Pennings; G Meersseman; E M Bradbury
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

Review 9.  The complex pathology of trinucleotide repeats.

Authors:  P S Reddy; D E Housman
Journal:  Curr Opin Cell Biol       Date:  1997-06       Impact factor: 8.382

10.  DNA damage can alter the stability of nucleosomes: effects are dependent on damage type.

Authors:  D B Mann; D L Springer; M J Smerdon
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

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  41 in total

Review 1.  When repair meets chromatin. First in series on chromatin dynamics.

Authors:  Catherine M Green; Geneviève Almouzni
Journal:  EMBO Rep       Date:  2002-01       Impact factor: 8.807

2.  Preferential interaction of the core histone tail domains with linker DNA.

Authors:  D Angelov; J M Vitolo; V Mutskov; S Dimitrov; J J Hayes
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-29       Impact factor: 11.205

3.  Nucleosome remodeling by the human SWI/SNF complex requires transient global disruption of histone-DNA interactions.

Authors:  Sayura Aoyagi; Geeta Narlikar; Chunyang Zheng; Saïd Sif; Robert E Kingston; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

4.  Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme.

Authors:  Iestyn Whitehouse; Chris Stockdale; Andrew Flaus; Mark D Szczelkun; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

5.  hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism.

Authors:  Sayura Aoyagi; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

6.  DNA base excision repair of uracil residues in reconstituted nucleosome core particles.

Authors:  Hilde Nilsen; Tomas Lindahl; Alain Verreault
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

7.  Nucleosome disruption by DNA ligase III-XRCC1 promotes efficient base excision repair.

Authors:  Ian D Odell; Joy-El Barbour; Drew L Murphy; Julie A Della-Maria; Joann B Sweasy; Alan E Tomkinson; Susan S Wallace; David S Pederson
Journal:  Mol Cell Biol       Date:  2011-09-19       Impact factor: 4.272

8.  Structural features of transcription factor IIIA bound to a nucleosome in solution.

Authors:  Joseph M Vitolo; Zungyoon Yang; Ravi Basavappa; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

Review 9.  Chromatin replication and epigenome maintenance.

Authors:  Constance Alabert; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

Review 10.  Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.

Authors:  Sharon Pepenella; Kevin J Murphy; Jeffrey J Hayes
Journal:  Chromosoma       Date:  2013-08-31       Impact factor: 4.316

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