Literature DB >> 12370295

hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism.

Sayura Aoyagi1, Jeffrey J Hayes.   

Abstract

Nucleosome remodeling by the hSWI/SNF complex and other chromatin remodeling complexes can cause translocation (sliding) of the histone octamer in cis along DNA. Structural and biochemical evidence suggest that sliding involves a DNA twist-diffusion process whereby the DNA rotates about the helical axis without major displacement from the surface of the nucleosome and that this process may be driven by torsional stress within the DNA. We report that hSWI/SNF efficiently catalyzes sliding of nucleosomes containing branched DNAs as steric blocks to twist-diffusion and a nick to allow dissipation of torsional stress within the nucleosome. These results suggest that SWI/SNF-catalyzed nucleosome sliding does not occur exclusively via a simple twist-diffusion mechanism and support models in which the DNA maintains its rotational orientation to and is at least partially separated from the histone surface during nucleosome translocation.

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Year:  2002        PMID: 12370295      PMCID: PMC135680          DOI: 10.1128/MCB.22.21.7484-7490.2002

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  40 in total

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4.  Roles of the histone H2A-H2B dimers and the (H3-H4)(2) tetramer in nucleosome remodeling by the SWI-SNF complex.

Authors:  L A Boyer; X Shao; R H Ebright; C L Peterson
Journal:  J Biol Chem       Date:  2000-04-21       Impact factor: 5.157

5.  ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex.

Authors:  D Guschin; P A Wade; N Kikyo; A P Wolffe
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Review 6.  ATP-dependent chromatin-remodeling complexes.

Authors:  M Vignali; A H Hassan; K E Neely; J L Workman
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

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Authors:  B D Strahl; C D Allis
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8.  Nucleosome remodeling by the human SWI/SNF complex requires transient global disruption of histone-DNA interactions.

Authors:  Sayura Aoyagi; Geeta Narlikar; Chunyang Zheng; Saïd Sif; Robert E Kingston; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

9.  Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex.

Authors:  H Kwon; A N Imbalzano; P A Khavari; R E Kingston; M R Green
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10.  Facilitated binding of TATA-binding protein to nucleosomal DNA.

Authors:  A N Imbalzano; H Kwon; M R Green; R E Kingston
Journal:  Nature       Date:  1994-08-11       Impact factor: 49.962

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  17 in total

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3.  The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism.

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Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

4.  Chromatin remodeling by DNA bending, not twisting.

Authors:  Yahli Lorch; Barbara Davis; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

Review 5.  Role of miRNAs and epigenetics in neural stem cell fate determination.

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Journal:  Epigenetics       Date:  2013-12-16       Impact factor: 4.528

Review 6.  Nucleosome sliding mechanisms: new twists in a looped history.

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Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

7.  SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.

Authors:  Ning Liu; Craig L Peterson; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2011-08-22       Impact factor: 4.272

Review 8.  Regulating the chromatin landscape: structural and mechanistic perspectives.

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9.  Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles.

Authors:  Hillel I Sims; Jacqueline M Lane; Natalia P Ulyanova; Gavin R Schnitzler
Journal:  Biochemistry       Date:  2007-09-18       Impact factor: 3.162

10.  Uracil DNA glycosylase activity on nucleosomal DNA depends on rotational orientation of targets.

Authors:  Hope A Cole; Jenna M Tabor-Godwin; Jeffrey J Hayes
Journal:  J Biol Chem       Date:  2009-11-19       Impact factor: 5.157

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