Literature DB >> 10841582

Anaerobic chlorophyll isocyclic ring formation in Rhodobacter capsulatus requires a cobalamin cofactor.

S P Gough1, B O Petersen, J O Duus.   

Abstract

The isocyclic ring of bacteriochlorophyll (BChl) is formed by the conversion of Mg-protoporphyrin monomethyl ester (MPE) to protochlorophyllide (PChlide). Similarities revealed by blast searches with the putative anaerobic MPE-cyclase BchE suggested to us that this protein also uses a cobalamin cofactor. We found that vitamin B(12) (B(12))-requiring mutants of the bluE and bluB genes of Rhodobacter capsulatus, grown without B(12), accumulated Mg-porphyrins. Laser desorption/ionization time-of-flight (LDI-TOF) MS and NMR spectroscopy identified them as MPE and its 3-vinyl-8-ethyl (mvMPE) derivative. An in vivo assay was devised for the cyclase converting MPE to PChlide. Cyclase activity in the B(12)-dependent mutants required B(12) but not protein synthesis. The following reaction mechanism is proposed for this MPE-cyclase reaction. Adenosylcobalamin forms the adenosyl radical, which leads to withdrawal of a hydrogen atom and formation of the benzylic-type 13(1)-radical of MPE. Withdrawal of an electron gives the 13(1)-cation of MPE. Hydroxyl ion attack on the cation gives 13(1)-hydroxy-MPE. Withdrawal of three hydrogen atoms leads successively to 13(1)-keto-MPE, its 13(2)-radical, and cyclization to PChlide.

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Year:  2000        PMID: 10841582      PMCID: PMC18774          DOI: 10.1073/pnas.97.12.6908

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  THE BIOSYNTHESIS OF COPROPORPHYRINOGEN, MAGNESIUM PROTOPORPHYRIN MONOMETHYL ESTER AND BACTERIOCHLOROPHYLL BY RHODOPSEUDOMONAS CAPSULATA.

Authors:  R COOPER
Journal:  Biochem J       Date:  1963-10       Impact factor: 3.857

2.  Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center.

Authors:  L B Davin; H B Wang; A L Crowell; D L Bedgar; D M Martin; S Sarkanen; N G Lewis
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

3.  Genetic evidence for superoperonal organization of genes for photosynthetic pigments and pigment-binding proteins in Rhodobacter capsulatus.

Authors:  D A Young; C E Bauer; J C Williams; B L Marrs
Journal:  Mol Gen Genet       Date:  1989-07

4.  [2Fe-2S] to [4Fe-4S] cluster conversion in Escherichia coli biotin synthase.

Authors:  E C Duin; M E Lafferty; B R Crouse; R M Allen; I Sanyal; D H Flint; M K Johnson
Journal:  Biochemistry       Date:  1997-09-30       Impact factor: 3.162

5.  Automated and semiautomated analysis of homo- and heteronuclear multidimensional nuclear magnetic resonance spectra of proteins: the program Pronto.

Authors:  M Kjaer; K V Andersen; F M Poulsen
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

6.  Co-ordinate variations in methylmalonyl-CoA mutase and methionine synthase, and the cobalamin cofactors in human glioma cells during nitrous oxide exposure and the subsequent recovery phase.

Authors:  B Riedel; T Fiskerstrand; H Refsum; P M Ueland
Journal:  Biochem J       Date:  1999-07-01       Impact factor: 3.857

7.  The Chlorophyll Biosynthetic Enzyme Mg-Protoporphyrin IX Monomethyl Ester (Oxidative) Cyclase (Characterization and Partial Purification from Chlamydomonas reinhardtii and Synechocystis sp. PCC 6803).

Authors:  D. W. Bollivar; S. I. Beale
Journal:  Plant Physiol       Date:  1996-09       Impact factor: 8.340

8.  Incorporation of atmospheric oxygen into the carbonyl functionality of the protochlorophyllide isocyclic ring.

Authors:  C J Walker; K E Mansfield; K M Smith; P A Castelfranco
Journal:  Biochem J       Date:  1989-01-15       Impact factor: 3.857

9.  Conversion of endogenous cobalamins into microbiologically-inactive cobalamin analogues in rats by exposure to nitrous oxide.

Authors:  M Muir; I Chanarin
Journal:  Br J Haematol       Date:  1984-11       Impact factor: 6.998

10.  Selective inhibition of chlorophyll biosynthesis by nicotinamide.

Authors:  Y Shioi; M Doi; B Böddi
Journal:  Arch Biochem Biophys       Date:  1988-11-15       Impact factor: 4.013

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  44 in total

Review 1.  The tetrapyrrole biosynthetic pathway and its regulation in Rhodobacter capsulatus.

Authors:  Sébastien Zappa; Keran Li; Carl E Bauer
Journal:  Adv Exp Med Biol       Date:  2010       Impact factor: 2.622

2.  The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

Authors:  Jonathan A Eisen; Karen E Nelson; Ian T Paulsen; John F Heidelberg; Martin Wu; Robert J Dodson; Robert Deboy; Michelle L Gwinn; William C Nelson; Daniel H Haft; Erin K Hickey; Jeremy D Peterson; A Scott Durkin; James L Kolonay; Fan Yang; Ingeborg Holt; Lowell A Umayam; Tanya Mason; Michael Brenner; Terrance P Shea; Debbie Parksey; William C Nierman; Tamara V Feldblyum; Cheryl L Hansen; M Brook Craven; Diana Radune; Jessica Vamathevan; Hoda Khouri; Owen White; Tanja M Gruber; Karen A Ketchum; J Craig Venter; Hervé Tettelin; Donald A Bryant; Claire M Fraser
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

3.  ;Every dogma has its day': a personal look at carbon metabolism in photosynthetic bacteria.

Authors:  John Ormerod
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

4.  The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1.

Authors:  C Mackenzie; M Choudhary; F W Larimer; P F Predki; S Stilwagen; J P Armitage; R D Barber; T J Donohue; J P Hosler; J E Newman; J P Shapleigh; R E Sockett; J Zeilstra-Ryalls; S Kaplan
Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

5.  Finding the final pieces of the vitamin B12 biosynthetic jigsaw.

Authors:  Martin J Warren
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

6.  Regulation of the Rhodobacter sphaeroides 2.4.1 hemA gene by PrrA and FnrL.

Authors:  Britton Ranson-Olson; Jill H Zeilstra-Ryalls
Journal:  J Bacteriol       Date:  2008-08-08       Impact factor: 3.490

7.  PpsR, a regulator of heme and bacteriochlorophyll biosynthesis, is a heme-sensing protein.

Authors:  Liang Yin; Vladimira Dragnea; Carl E Bauer
Journal:  J Biol Chem       Date:  2012-02-29       Impact factor: 5.157

Review 8.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

9.  Rhodobacterales use a unique L-threonine kinase for the assembly of the nucleotide loop of coenzyme B12.

Authors:  Norbert K Tavares; Chelsey M VanDrisse; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2018-10-03       Impact factor: 3.501

Review 10.  Anaerobic functionalization of unactivated C-H bonds.

Authors:  Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2009-03-16       Impact factor: 8.822

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