Literature DB >> 20532744

The tetrapyrrole biosynthetic pathway and its regulation in Rhodobacter capsulatus.

Sébastien Zappa1, Keran Li, Carl E Bauer.   

Abstract

The purple anoxygenic photosynthetic bacterium Rhodobacter capsulatus is capable of growing in aerobic or anaerobic conditions, in the dark or using light, etc. Achieving versatile metabolic adaptations from respiration to photosynthesis requires the use of tetrapyrroles such as heme and bacteriochlorophyll, in order to carry oxygen, to transfer electrons, and to harvest light energy. A third tetrapyrrole, cobalamin (vitamin B(12)), is synthesized and used as a cofactor for many enzymes. Heme, bacteriochlorophyll, and vitamin B(12) constitute three major end products of the tetrapyrrole biosynthetic pathway in purple bacteria. Their respective synthesis involves a plethora of enzymes, several that have been characterized and several that are uncharacterized, as described in this review. To respond to changes in metabolic requirements, the pathway undergoes complex regulation to direct the flow of tetrapyrrole intermediates into a specific branch(s) at the expense of other branches of the pathway. Transcriptional regulation of the tetrapyrrole synthesizing enzymes by redox conditions and pathway intermediates is reviewed. In addition, we discuss the involvement of several transcription factors (RegA, CrtJ, FnrL, AerR, HbrL, Irr) as well as the role of riboswitches. Finally, the interdependence of the tetrapyrrole branches on each other synthesis is discussed.

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Year:  2010        PMID: 20532744      PMCID: PMC2883787          DOI: 10.1007/978-1-4419-1528-3_13

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  88 in total

Review 1.  Microbial production of vitamin B12.

Authors:  J H Martens; H Barg; M J Warren; D Jahn
Journal:  Appl Microbiol Biotechnol       Date:  2001-12-20       Impact factor: 4.813

Review 2.  Biosynthesis of cobalamin (vitamin B(12)).

Authors:  A I Scott; C A Roessner
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

3.  RegA control of bacteriochlorophyll and carotenoid synthesis in Rhodobacter capsulatus.

Authors:  Jonathan Willett; James L Smart; Carl E Bauer
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

4.  CrtJ bound to distant binding sites interacts cooperatively to aerobically repress photopigment biosynthesis and light harvesting II gene expression in Rhodobacter capsulatus.

Authors:  S Elsen; S N Ponnampalam; C E Bauer
Journal:  J Biol Chem       Date:  1998-11-13       Impact factor: 5.157

5.  Evolutionary relationship between initial enzymes of tetrapyrrole biosynthesis.

Authors:  Jörg O Schulze; Wolf-Dieter Schubert; Jürgen Moser; Dieter Jahn; Dirk W Heinz
Journal:  J Mol Biol       Date:  2006-03-10       Impact factor: 5.469

6.  Anaerobic chlorophyll isocyclic ring formation in Rhodobacter capsulatus requires a cobalamin cofactor.

Authors:  S P Gough; B O Petersen; J O Duus
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

Authors:  Dmitry A Rodionov; Alexey G Vitreschak; Andrey A Mironov; Mikhail S Gelfand
Journal:  J Biol Chem       Date:  2003-07-17       Impact factor: 5.157

8.  Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes.

Authors:  Ali Nahvi; Jeffrey E Barrick; Ronald R Breaker
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

9.  Mobilization of the genes for photosynthesis from Rhodopseudomonas capsulata by a promiscuous plasmid.

Authors:  B Marrs
Journal:  J Bacteriol       Date:  1981-06       Impact factor: 3.490

10.  How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase.

Authors:  C L Drennan; S Huang; J T Drummond; R G Matthews; M L Ludwig
Journal:  Science       Date:  1994-12-09       Impact factor: 47.728

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  21 in total

Review 1.  One ring to rule them all: trafficking of heme and heme synthesis intermediates in the metazoans.

Authors:  Iqbal Hamza; Harry A Dailey
Journal:  Biochim Biophys Acta       Date:  2012-05-08

2.  Elucidation of roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism.

Authors:  Margaret F Romine; Dmitry A Rodionov; Yukari Maezato; Lindsey N Anderson; Premchendar Nandhikonda; Irina A Rodionova; Alexandre Carre; Xiaoqing Li; Chengdong Xu; Therese R W Clauss; Young-Mo Kim; Thomas O Metz; Aaron T Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

3.  CarF mediates signaling by singlet oxygen, generated via photoexcited protoporphyrin IX, in Myxococcus xanthus light-induced carotenogenesis.

Authors:  Marisa Galbis-Martínez; S Padmanabhan; Francisco J Murillo; Montserrat Elías-Arnanz
Journal:  J Bacteriol       Date:  2012-01-20       Impact factor: 3.490

4.  Borrelia Host Adaptation Protein (BadP) Is Required for the Colonization of a Mammalian Host by the Agent of Lyme Disease.

Authors:  Trever C Smith; Sarah M Helm; Yue Chen; Ying-Han Lin; S L Rajasekhar Karna; J Seshu
Journal:  Infect Immun       Date:  2018-06-21       Impact factor: 3.441

5.  Gut microbiota differences in Island Hispanic Puerto Ricans and mainland non-Hispanic whites during chemoradiation for rectal cancer: A pilot study.

Authors:  Velda J González-Mercado; Jean Lim; Lawrence Berk; Mary Esele; Carmen S Rodríguez; Gerardo Colón-Otero
Journal:  Curr Probl Cancer       Date:  2020-01-27       Impact factor: 3.187

Review 6.  The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features.

Authors:  Mia Terashima; Michael Specht; Michael Hippler
Journal:  Curr Genet       Date:  2011-04-30       Impact factor: 3.886

Review 7.  Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.

Authors:  Harry A Dailey; Tamara A Dailey; Svetlana Gerdes; Dieter Jahn; Martina Jahn; Mark R O'Brian; Martin J Warren
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-25       Impact factor: 11.056

Review 8.  Controlling the delicate balance of tetrapyrrole biosynthesis.

Authors:  Liang Yin; Carl E Bauer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

9.  Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.

Authors:  Christian G Klatt; Zhenfeng Liu; Marcus Ludwig; Michael Kühl; Sheila I Jensen; Donald A Bryant; David M Ward
Journal:  ISME J       Date:  2013-04-11       Impact factor: 10.302

10.  The LysR-type transcription factor HbrL is a global regulator of iron homeostasis and porphyrin synthesis in Rhodobacter capsulatus.

Authors:  Sébastien Zappa; Carl E Bauer
Journal:  Mol Microbiol       Date:  2013-11-08       Impact factor: 3.501

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