Literature DB >> 10570143

NMR spectroscopy in studies of light-induced structural changes in mammalian rhodopsin: applicability of solution (19)F NMR.

J Klein-Seetharaman1, E V Getmanova, M C Loewen, P J Reeves, H G Khorana.   

Abstract

We report high resolution solution (19)F NMR spectra of fluorine-labeled rhodopsin mutants in detergent micelles. Single cysteine substitution mutants in the cytoplasmic face of rhodopsin were labeled by attachment of the trifluoroethylthio (TET), CF(3)-CH(2)-S, group through a disulfide linkage. TET-labeled cysteine mutants at amino acid positions 67, 140, 245, 248, 311, and 316 in rhodopsin were thus prepared. Purified mutant rhodopsins (6-10 mg), in dodecylmaltoside, were analyzed at 20 degrees C by solution (19)F NMR spectroscopy. The spectra recorded in the dark showed the following chemical shifts relative to trifluoroacetate: Cys-67, 9.8 ppm; Cys-140, 10.6 ppm; Cys-245, 9.9 ppm; Cys-248, 9.5 ppm; Cys-311, 9.9 ppm; and Cys-316, 10.0 ppm. Thus, all mutants showed chemical shifts downfield that of free TET (6.5 ppm). On illumination to form metarhodopsin II, upfield changes in chemical shift were observed for (19)F labels at positions 67 (-0.2 ppm) and 140 (-0.4 ppm) and downfield changes for positions 248 (+0.1 ppm) and 316 (+0.1 ppm) whereas little or no change was observed at positions 311 and 245. On decay of metarhodopsin II, the chemical shifts reverted largely to those originally observed in the dark. The results demonstrate the applicability of solution (19)F NMR spectroscopy to studies of the tertiary structures in the cytoplasmic face of intact rhodopsin in the dark and on light activation.

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Year:  1999        PMID: 10570143      PMCID: PMC24135          DOI: 10.1073/pnas.96.24.13744

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin.

Authors:  D L Farrens; C Altenbach; K Yang; W L Hubbell; H G Khorana
Journal:  Science       Date:  1996-11-01       Impact factor: 47.728

Review 2.  Use of 19F NMR to probe protein structure and conformational changes.

Authors:  M A Danielson; J J Falke
Journal:  Annu Rev Biophys Biomol Struct       Date:  1996

3.  Structure and function in rhodopsin: high level expression of a synthetic bovine opsin gene and its mutants in stable mammalian cell lines.

Authors:  P J Reeves; R L Thurmond; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

4.  The preparation of 11-cis-retinal.

Authors:  A Knowles; A Priestley
Journal:  Vision Res       Date:  1978       Impact factor: 1.886

5.  Structure and function in rhodopsin. Cysteines 65 and 316 are in proximity in a rhodopsin mutant as indicated by disulfide formation and interactions between attached spin labels.

Authors:  K Yang; D L Farrens; C Altenbach; Z T Farahbakhsh; W L Hubbell; H G Khorana
Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

6.  Structure and function in rhodopsin. Single cysteine substitution mutants in the cytoplasmic interhelical E-F loop region show position-specific effects in transducin activation.

Authors:  K Yang; D L Farrens; W L Hubbell; H G Khorana
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

7.  Structural features and light-dependent changes in the cytoplasmic interhelical E-F loop region of rhodopsin: a site-directed spin-labeling study.

Authors:  C Altenbach; K Yang; D L Farrens; Z T Farahbakhsh; H G Khorana; W L Hubbell
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

8.  Rhodopsin activation blocked by metal-ion-binding sites linking transmembrane helices C and F.

Authors:  S P Sheikh; T A Zvyaga; O Lichtarge; T P Sakmar; H R Bourne
Journal:  Nature       Date:  1996-09-26       Impact factor: 49.962

9.  Mapping light-dependent structural changes in the cytoplasmic loop connecting helices C and D in rhodopsin: a site-directed spin labeling study.

Authors:  Z T Farahbakhsh; K D Ridge; H G Khorana; W L Hubbell
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

10.  The molar extinction of rhodopsin.

Authors:  G WALD; P K BROWN
Journal:  J Gen Physiol       Date:  1953-11-20       Impact factor: 4.086

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  39 in total

1.  Solution 19F nuclear Overhauser effects in structural studies of the cytoplasmic domain of mammalian rhodopsin.

Authors:  M C Loewen; J Klein-Seetharaman; E V Getmanova; P J Reeves; H Schwalbe; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

2.  Role of the conserved NPxxY(x)5,6F motif in the rhodopsin ground state and during activation.

Authors:  Olaf Fritze; Sławomir Filipek; Vladimir Kuksa; Krzysztof Palczewski; Klaus Peter Hofmann; Oliver P Ernst
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-24       Impact factor: 11.205

3.  Differential dynamics in the G protein-coupled receptor rhodopsin revealed by solution NMR.

Authors:  Judith Klein-Seetharaman; Naveena V K Yanamala; Fathima Javeed; Philip J Reeves; Elena V Getmanova; Michele C Loewen; Harald Schwalbe; H Gobind Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

4.  High-resolution NMR spectroscopy of a GPCR in aligned bicelles.

Authors:  Sang Ho Park; Stefan Prytulla; Anna A De Angelis; Jonathan Miles Brown; Hans Kiefer; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

5.  β₂-adrenergic receptor activation by agonists studied with ¹⁹F NMR spectroscopy.

Authors:  Reto Horst; Jeffrey J Liu; Raymond C Stevens; Kurt Wüthrich
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-16       Impact factor: 15.336

6.  A comparison of chemical shift sensitivity of trifluoromethyl tags: optimizing resolution in ¹⁹F NMR studies of proteins.

Authors:  Libin Ye; Sacha Thierry Larda; Yi Feng Frank Li; Aashish Manglik; R Scott Prosser
Journal:  J Biomol NMR       Date:  2015-03-27       Impact factor: 2.835

7.  Biased signaling pathways in β2-adrenergic receptor characterized by 19F-NMR.

Authors:  Jeffrey J Liu; Reto Horst; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich
Journal:  Science       Date:  2012-01-19       Impact factor: 47.728

8.  Protein-observed (19)F-NMR for fragment screening, affinity quantification and druggability assessment.

Authors:  Clifford T Gee; Keith E Arntson; Andrew K Urick; Neeraj K Mishra; Laura M L Hawk; Andrea J Wisniewski; William C K Pomerantz
Journal:  Nat Protoc       Date:  2016-07-14       Impact factor: 13.491

9.  19F labelled glycosaminoglycan probes for solution NMR and non-linear (CARS) microscopy.

Authors:  Marcelo A Lima; Renan P Cavalheiro; Gustavo M Viana; Maria C Z Meneghetti; Timothy R Rudd; Mark A Skidmore; Andrew K Powell; Edwin A Yates
Journal:  Glycoconj J       Date:  2016-08-15       Impact factor: 2.916

Review 10.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

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