Literature DB >> 14990789

Differential dynamics in the G protein-coupled receptor rhodopsin revealed by solution NMR.

Judith Klein-Seetharaman1, Naveena V K Yanamala, Fathima Javeed, Philip J Reeves, Elena V Getmanova, Michele C Loewen, Harald Schwalbe, H Gobind Khorana.   

Abstract

G protein-coupled receptors are cell-surface seven-helical membrane proteins that undergo conformational changes on activation. The mammalian photoreceptor, rhodopsin, is the best-studied member of this superfamily. Here, we provide the first evidence that activation in rhodopsin may involve differential dynamic properties of side-chain versus backbone atoms. High-resolution NMR studies of alpha-(15)N-labeled receptor revealed large backbone motions in the inactive dark state. In contrast, indole side-chain (15)N groups of tryptophans showed well resolved, equally intense NMR signals, suggesting restriction to a single specific conformation.

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Year:  2004        PMID: 14990789      PMCID: PMC373475          DOI: 10.1073/pnas.0308713101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

Review 1.  Rhodopsin structure, dynamics, and activation: a perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking.

Authors:  Wayne L Hubbell; Christian Altenbach; Cheryl M Hubbell; H Gobind Khorana
Journal:  Adv Protein Chem       Date:  2003

2.  PROSHIFT: protein chemical shift prediction using artificial neural networks.

Authors:  Jens Meiler
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

3.  Mapping of the amino acids in membrane-embedded helices that interact with the retinal chromophore in bovine rhodopsin.

Authors:  T A Nakayama; H G Khorana
Journal:  J Biol Chem       Date:  1991-03-05       Impact factor: 5.157

4.  Orientation of retinal in bovine rhodopsin determined by cross-linking using a photoactivatable analog of 11-cis-retinal.

Authors:  T A Nakayama; H G Khorana
Journal:  J Biol Chem       Date:  1990-09-15       Impact factor: 5.157

5.  A mutation-induced activated state of the beta 2-adrenergic receptor. Extending the ternary complex model.

Authors:  P Samama; S Cotecchia; T Costa; R J Lefkowitz
Journal:  J Biol Chem       Date:  1993-03-05       Impact factor: 5.157

6.  Orientation of aromatic residues in rhodopsin. Rotation of one tryptophan upon the meta I to meta II transition afer illumination.

Authors:  M Chabre; J Breton
Journal:  Photochem Photobiol       Date:  1979-08       Impact factor: 3.421

7.  1H-15N-NMR studies of bacteriorhodopsin Halobacterium halobium. Conformational dynamics of the four-helical bundle.

Authors:  G V Abdulaeva; A S Arseniev
Journal:  Eur J Biochem       Date:  1992-11-15

8.  Constitutive activation of opsin: influence of charge at position 134 and size at position 296.

Authors:  G B Cohen; T Yang; P R Robinson; D D Oprian
Journal:  Biochemistry       Date:  1993-06-15       Impact factor: 3.162

9.  Light-stable rhodopsin. II. An opsin mutant (TRP-265----Phe) and a retinal analog with a nonisomerizable 11-cis configuration form a photostable chromophore.

Authors:  K D Ridge; S Bhattacharya; T A Nakayama; H G Khorana
Journal:  J Biol Chem       Date:  1992-04-05       Impact factor: 5.157

10.  Backbone dynamics of (1-71)bacterioopsin studied by two-dimensional 1H-15N NMR spectroscopy.

Authors:  K V Pervushin; A S Arseniev
Journal:  Eur J Biochem       Date:  1994-02-01
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  30 in total

1.  Isotope labeling in mammalian cells.

Authors:  Arpana Dutta; Krishna Saxena; Harald Schwalbe; Judith Klein-Seetharaman
Journal:  Methods Mol Biol       Date:  2012

2.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

3.  The essential role for aromatic cluster in the β3 adrenergic receptor.

Authors:  Hai-yan Cai; Zhi-jian Xu; Jie Tang; Ying Sun; Kai-xian Chen; He-yao Wang; Wei-liang Zhu
Journal:  Acta Pharmacol Sin       Date:  2012-06-25       Impact factor: 6.150

4.  High-resolution NMR spectroscopy of a GPCR in aligned bicelles.

Authors:  Sang Ho Park; Stefan Prytulla; Anna A De Angelis; Jonathan Miles Brown; Hans Kiefer; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

Review 5.  Computational methods in drug design: modeling G protein-coupled receptor monomers, dimers, and oligomers.

Authors:  Patricia H Reggio
Journal:  AAPS J       Date:  2006-05-12       Impact factor: 4.009

6.  Bacteriorhodopsin chimeras containing the third cytoplasmic loop of bovine rhodopsin activate transducin for GTP/GDP exchange.

Authors:  Andrew H Geiser; Michael K Sievert; Lian-Wang Guo; Jennifer E Grant; Mark P Krebs; Dimitrios Fotiadis; Andreas Engel; Arnold E Ruoho
Journal:  Protein Sci       Date:  2006-07       Impact factor: 6.725

7.  Conformational states and dynamics of rhodopsin in micelles and bilayers.

Authors:  Ana Karin Kusnetzow; Christian Altenbach; Wayne L Hubbell
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

Review 8.  Vertebrate membrane proteins: structure, function, and insights from biophysical approaches.

Authors:  Daniel J Müller; Nan Wu; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2008-03-05       Impact factor: 25.468

9.  Conformational changes in the parathyroid hormone receptor associated with activation by agonist.

Authors:  Beena E Thomas; Iwona Woznica; Dale F Mierke; Angela Wittelsberger; Michael Rosenblatt
Journal:  Mol Endocrinol       Date:  2008-02-07

10.  Effective isotope labeling of proteins in a mammalian expression system.

Authors:  Mallika Sastry; Carole A Bewley; Peter D Kwong
Journal:  Methods Enzymol       Date:  2015-10-23       Impact factor: 1.600

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