Literature DB >> 10523527

A resource of mapped human bacterial artificial chromosome clones.

V G Cheung1, H L Dalrymple, S Narasimhan, J Watts, G Schuler, A K Raap, M Morley, A Bruzel.   

Abstract

To date, despite the increasing number of genomic tools, there is no repository of ordered human BAC clones that covers entire chromosomes. This project presents a resource of mapped large DNA fragments that span eight human chromosomes at approximately 1-Mb resolution. These DNA fragments are bacterial artificial chromosome (BAC) clones anchored to sequence tagged site (STS) markers. This clone collection, which currently contains 759 mapped clones, is useful in a wide range of applications from microarray-based gene mapping to identification of chromosomal mutations. In addition to the clones themselves, we describe a database, GenMapDB (http://genomics.med.upenn.edu/genmapdb), that contains information about each clone in our collection.

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Year:  1999        PMID： 10523527      PMCID： PMC310825          DOI： 10.1101/gr.9.10.989

Source DB:  PubMed          Journal:  Genome Res        ISSN： 1088-9051            Impact factor:   9.043


  10 in total

1.  A radiation hybrid map of the human genome.

Authors:  G Gyapay; K Schmitt; C Fizames; H Jones; N Vega-Czarny; D Spillett; D Muselet; J F Prud'homme; C Dib; C Auffray; J Morissette; J Weissenbach; P N Goodfellow
Journal:  Hum Mol Genet       Date:  1996-03       Impact factor: 6.150

2.  An improved approach for construction of bacterial artificial chromosome libraries.

Authors:  K Osoegawa; P Y Woon; B Zhao; E Frengen; M Tateno; J J Catanese; P J de Jong
Journal:  Genomics       Date:  1998-08-15       Impact factor: 5.736

3.  Enrichment for loci identical-by-descent between pairs of mouse or human genomes by genomic mismatch scanning.

Authors:  L McAllister; L Penland; P O Brown
Journal:  Genomics       Date:  1998-01-01       Impact factor: 5.736

4.  Linkage-disequilibrium mapping without genotyping.

Authors:  V G Cheung; J P Gregg; K J Gogolin-Ewens; J Bandong; C A Stanley; L Baker; M J Higgins; N J Nowak; T B Shows; W J Ewens; S F Nelson; R S Spielman
Journal:  Nat Genet       Date:  1998-03       Impact factor: 38.330

5.  X chromosome map at 75-kb STS resolution, revealing extremes of recombination and GC content.

Authors:  R Nagaraja; S MacMillan; J Kere; C Jones; S Griffin; M Schmatz; J Terrell; M Shomaker; C Jermak; C Hott; M Masisi; S Mumm; A Srivastava; G Pilia; T Featherstone; R Mazzarella; S Kesterson; B McCauley; B Railey; F Burough; V Nowotny; M D'Urso; D States; B Brownstein; D Schlessinger
Journal:  Genome Res       Date:  1997-03       Impact factor: 9.043

6.  Genomic mismatch scanning identifies human genomic DNA shared identical by descent.

Authors:  V G Cheung; S F Nelson
Journal:  Genomics       Date:  1998-01-01       Impact factor: 5.736

7.  Genomic mismatch scanning: a new approach to genetic linkage mapping.

Authors:  S F Nelson; J H McCusker; M A Sander; Y Kee; P Modrich; P O Brown
Journal:  Nat Genet       Date:  1993-05       Impact factor: 38.330

8.  A physical map of 30,000 human genes.

Authors:  P Deloukas; G D Schuler; G Gyapay; E M Beasley; C Soderlund; P Rodriguez-Tomé; L Hui; T C Matise; K B McKusick; J S Beckmann; S Bentolila; M Bihoreau; B B Birren; J Browne; A Butler; A B Castle; N Chiannilkulchai; C Clee; P J Day; A Dehejia; T Dibling; N Drouot; S Duprat; C Fizames; S Fox; S Gelling; L Green; P Harrison; R Hocking; E Holloway; S Hunt; S Keil; P Lijnzaad; C Louis-Dit-Sully; J Ma; A Mendis; J Miller; J Morissette; D Muselet; H C Nusbaum; A Peck; S Rozen; D Simon; D K Slonim; R Staples; L D Stein; E A Stewart; M A Suchard; T Thangarajah; N Vega-Czarny; C Webber; X Wu; J Hudson; C Auffray; N Nomura; J M Sikela; M H Polymeropoulos; M R James; E S Lander; T J Hudson; R M Myers; D R Cox; J Weissenbach; M S Boguski; D R Bentley
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

9.  New goals for the U.S. Human Genome Project: 1998-2003.

Authors:  F S Collins; A Patrinos; E Jordan; A Chakravarti; R Gesteland; L Walters
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

10.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Authors:  D Pinkel; R Segraves; D Sudar; S Clark; I Poole; D Kowbel; C Collins; W L Kuo; C Chen; Y Zhai; S H Dairkee; B M Ljung; J W Gray; D G Albertson
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330
  10 in total
  4 in total

1.  GenMapDB: a database of mapped human BAC clones.

Authors:  M Morley; M Arcaro; J Burdick; R Yonescu; T Reid; I R Kirsch; V G Cheung
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  A comprehensive BAC resource.

Authors:  S Zhao
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Integration of cytogenetic landmarks into the draft sequence of the human genome.

Authors:  V G Cheung; N Nowak; W Jang; I R Kirsch; S Zhao; X N Chen; T S Furey; U J Kim; W L Kuo; M Olivier; J Conroy; A Kasprzyk; H Massa; R Yonescu; S Sait; C Thoreen; A Snijders; E Lemyre; J A Bailey; A Bruzel; W D Burrill; S M Clegg; S Collins; P Dhami; C Friedman; C S Han; S Herrick; J Lee; A H Ligon; S Lowry; M Morley; S Narasimhan; K Osoegawa; Z Peng; I Plajzer-Frick; B J Quade; D Scott; K Sirotkin; A A Thorpe; J W Gray; J Hudson; D Pinkel; T Ried; L Rowen; G L Shen-Ong; R L Strausberg; E Birney; D F Callen; J F Cheng; D R Cox; N A Doggett; N P Carter; E E Eichler; D Haussler; J R Korenberg; C C Morton; D Albertson; G Schuler; P J de Jong; B J Trask
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing.

Authors:  Heiner Kuhl; Alfred Beck; Grzegorz Wozniak; Adelino V M Canario; Filip A M Volckaert; Richard Reinhardt
Journal:  BMC Genomics       Date:  2010-01-27       Impact factor: 3.969
  4 in total

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