Literature DB >> 10352030

Modeling of ion channels.

D G Levitt1.   

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Year:  1999        PMID: 10352030      PMCID: PMC2225601          DOI: 10.1085/jgp.113.6.789

Source DB:  PubMed          Journal:  J Gen Physiol        ISSN: 0022-1295            Impact factor:   4.086


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  23 in total

1.  Refined structure of the porin from Rhodopseudomonas blastica. Comparison with the porin from Rhodobacter capsulatus.

Authors:  A Kreusch; G E Schulz
Journal:  J Mol Biol       Date:  1994-11-11       Impact factor: 5.469

Review 2.  Modelling and simulation of ion channels: applications to the nicotinic acetylcholine receptor.

Authors:  M S Sansom; C Adcock; G R Smith
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

3.  A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

Authors:  M G Kurnikova; R D Coalson; P Graf; A Nitzan
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

4.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

5.  A semi-microscopic Monte Carlo study of permeation energetics in a gramicidin-like channel: the origin of cation selectivity.

Authors:  V Dorman; M B Partenskii; P C Jordan
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

6.  Brownian dynamics study of ion transport in the vestibule of membrane channels.

Authors:  S C Li; M Hoyles; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

7.  Using theory and simulation to understand permeation and selectivity in ion channels.

Authors:  E Jakobsson
Journal:  Methods       Date:  1998-03       Impact factor: 3.608

8.  Ion channel selectivity through stepwise changes in binding affinity.

Authors:  T X Dang; E W McCleskey
Journal:  J Gen Physiol       Date:  1998-02       Impact factor: 4.086

9.  Molecular dynamics simulation of a synthetic ion channel.

Authors:  Q Zhong; Q Jiang; P B Moore; D M Newns; M L Klein
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

10.  The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data.

Authors:  T B Woolf; B Roux
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

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  21 in total

1.  The formation and dynamics of proton wires in channel environments.

Authors:  M L Brewer; U W Schmitt; G A Voth
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

2.  Three-dimensional Poisson-Nernst-Planck theory studies: influence of membrane electrostatics on gramicidin A channel conductance.

Authors:  A E Cárdenas; R D Coalson; M G Kurnikova
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

3.  Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics.

Authors:  B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

4.  Tests of continuum theories as models of ion channels. I. Poisson-Boltzmann theory versus Brownian dynamics.

Authors:  G Moy; B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

5.  Electrostatic influence on ion transport through the alphaHL channel.

Authors:  M Misakian; J J Kasianowicz
Journal:  J Membr Biol       Date:  2003-10-01       Impact factor: 1.843

6.  Improved 3D continuum calculations of ion flux through membrane channels.

Authors:  Assen Koumanov; Ulrich Zachariae; Harald Engelhardt; Andrey Karshikoff
Journal:  Eur Biophys J       Date:  2003-07-18       Impact factor: 1.733

7.  Energetics of ion permeation, rejection, binding, and block in gramicidin A from free energy simulations.

Authors:  Turgut Baştuğ; Serdar Kuyucak
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

8.  Equivalence of two approaches for modeling ion permeation through a transmembrane channel with an internal binding site.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2011-04-07       Impact factor: 3.488

9.  Poisson-Boltzmann-Nernst-Planck model.

Authors:  Qiong Zheng; Guo-Wei Wei
Journal:  J Chem Phys       Date:  2011-05-21       Impact factor: 3.488

10.  Dynamics of voltage profile in enzymatic ion transporters, demonstrated in electrokinetics of proton pumping rhodopsin.

Authors:  Rolf Hagedorn; Dietrich Gradmann; Peter Hegemann
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

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