Literature DB >> 18621842

Dynamics of voltage profile in enzymatic ion transporters, demonstrated in electrokinetics of proton pumping rhodopsin.

Rolf Hagedorn1, Dietrich Gradmann, Peter Hegemann.   

Abstract

H(+)-pumping rhodopsins mediate a primordial conversion of light to metabolic energy. Bacteriorhodopsin from Halobacterium salinarium is the first identified and (biochemically) best-studied H(+)-pumping rhodopsin. The electrical properties of H(+)-pumping rhodopsins, however, are known in more detail for the homolog Acetabularia rhodopsin, isolated from the eukaryotic green alga Acetabularia acetabulum. Based on data from Acetabularia rhodopsin we present a general reaction kinetic model of H(+)-pumping rhodopsins with only seven independent parameters, which fits the kinetic properties of photocurrents as functions of light, transmembrane voltage, internal and external pH, and time. The model describes fast photoisomerization of retinal with simultaneous H(+) transfer to an H(+) acceptor, reprotonation of retinal from the intracellular face via an H(+) donor, and proton release to the extracellular space via an H(+) release complex. The voltage sensitivities of the individual reaction steps and their temporal changes are treated here by a novel approach, whereby--as in an Ohmic voltage divider--the effective portions of the total transmembrane voltage decrease with the relative velocities of the individual reaction steps. This analysis quantitatively infers dynamic changes of the voltage profile and of the pK values of the H(+)-binding sites involved.

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Year:  2008        PMID: 18621842      PMCID: PMC2586558          DOI: 10.1529/biophysj.107.125260

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  48 in total

Review 1.  The voltage sensor in voltage-dependent ion channels.

Authors:  F Bezanilla
Journal:  Physiol Rev       Date:  2000-04       Impact factor: 37.312

2.  Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics.

Authors:  B Corry; S Kuyucak; S H Chung
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

3.  The voltage-dependent proton pumping in bacteriorhodopsin is characterized by optoelectric behavior.

Authors:  S Geibel; T Friedrich; P Ormos; P G Wood; G Nagel; E Bamberg
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

4.  Derivation of Poisson and Nernst-Planck equations in a bath and channel from a molecular model.

Authors:  Z Schuss; B Nadler; R S Eisenberg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-08-28

Review 5.  Protonation reactions and their coupling in bacteriorhodopsin.

Authors:  S P Balashov
Journal:  Biochim Biophys Acta       Date:  2000-08-30

6.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

7.  Dielectric self-energy in Poisson-Boltzmann and Poisson-Nernst-Planck models of ion channels.

Authors:  Ben Corry; Serdar Kuyucak; Shin-Ho Chung
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

8.  Structure and mechanism of the lactose permease of Escherichia coli.

Authors:  Jeff Abramson; Irina Smirnova; Vladimir Kasho; Gillian Verner; H Ronald Kaback; So Iwata
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

9.  pK(a) Calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin.

Authors:  V Z Spassov; H Luecke; K Gerwert; D Bashford
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

10.  Transmembranous incorporation of photoelectrically active bacteriorhodopsin in planar lipid bilayers.

Authors:  E Bamberg; N A Dencher; A Fahr; M P Heyn
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

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  5 in total

1.  A simple recipe for setting up the flux equations of cyclic and linear reaction schemes of ion transport with a high number of states: The arrow scheme.

Authors:  Ulf-Peter Hansen; Oliver Rauh; Indra Schroeder
Journal:  Channels (Austin)       Date:  2015-12-08       Impact factor: 2.581

2.  Rectification of the channelrhodopsin early conductance.

Authors:  Dietrich Gradmann; André Berndt; Franziska Schneider; Peter Hegemann
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

3.  Temporal dynamics of microbial rhodopsin fluorescence reports absolute membrane voltage.

Authors:  Jennifer H Hou; Veena Venkatachalam; Adam E Cohen
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

4.  Voltage dependence of proton pumping by bacteriorhodopsin mutants with altered lifetime of the M intermediate.

Authors:  Sven Geibel; Éva Lörinczi; Ernst Bamberg; Thomas Friedrich
Journal:  PLoS One       Date:  2013-09-03       Impact factor: 3.240

5.  Diffusion of Charged Species in Liquids.

Authors:  J A Del Río; S Whitaker
Journal:  Sci Rep       Date:  2016-11-04       Impact factor: 4.379

  5 in total

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