Literature DB >> 10220391

Statistical mechanics of protein-like heteropolymers.

R I Dima1, J R Banavar, M Cieplak, A Maritan.   

Abstract

A strategy is outlined for obtaining the free energy of a typical designed heteropolymer. The design procedure considers the probability that the target conformation is occupied in comparison with all the other conformations that could house the given sequence. Numerical calculations on lattice heteropolymer models are presented to illustrate the key physical principles.

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Year:  1999        PMID： 10220391      PMCID： PMC21789          DOI： 10.1073/pnas.96.9.4904

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  21 in total

1.  Criterion that determines the foldability of proteins.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-05-20       Impact factor: 9.161

2.  Optimal protein-folding codes from spin-glass theory.

Authors:  R A Goldstein; Z A Luthey-Schulten; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-01       Impact factor: 11.205

3.  Statistical mechanics of proteins with "evolutionary selected" sequences.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-08

4.  Freezing transition of random heteropolymers consisting of an arbitrary set of monomers.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-04

5.  Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach.

Authors:  E I Shakhnovich; A M Gutin
Journal:  Biophys Chem       Date:  1989-11       Impact factor: 2.352

Review 6.  Principles of protein folding--a perspective from simple exact models.

Authors:  K A Dill; S Bromberg; K Yue; K M Fiebig; D P Yee; P D Thomas; H S Chan
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

7.  Toward an outline of the topography of a realistic protein-folding funnel.

Authors:  J N Onuchic; P G Wolynes; Z Luthey-Schulten; N D Socci
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-11       Impact factor: 11.205

8.  Thermodynamic procedure to synthesize heteropolymers that can renature to recognize a given target molecule.

Authors:  V S Pande; A Y Grosberg; T Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-20       Impact factor: 11.205

9.  Evolution-like selection of fast-folding model proteins.

Authors:  A M Gutin; V I Abkevich; E I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

10.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205
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  3 in total

1.  Protein threading by learning.

Authors:  I Chang; M Cieplak; R I Dima; A Maritan; J R Banavar
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

2.  Uncovering the properties of energy-weighted conformation space networks with a hydrophobic-hydrophilic model.

Authors:  Zaizhi Lai; Jiguo Su; Weizu Chen; Cunxin Wang
Journal:  Int J Mol Sci       Date:  2009-04-21       Impact factor: 6.208

3.  Visualization of protein folding funnels in lattice models.

Authors:  Antonio B Oliveira; Francisco M Fatore; Fernando V Paulovich; Osvaldo N Oliveira; Vitor B P Leite
Journal:  PLoS One       Date:  2014-07-10       Impact factor: 3.240
  3 in total

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