Literature DB >> 2611345

Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach.

E I Shakhnovich1, A M Gutin.   

Abstract

A replica approach analogous to that used in spin glass systems is implemented to study the configurational space of a heteropolymeric model of protein with a quenched, disordered sequence of links in the limit of a large number of link types. It is shown that there exists a threshold value of chain heterogeneity which separates two qualitatively different types of behavior. For a low degree of heterogeneity the protein globule is like a homopolymer in a collapsed state without definite chain folds: an exponentially large number of folds make a significant contribution to the partition function in this regime. After the threshold heterogeneity has been overcome, the chain freezes drastically but without latent heat; few (approx. 1) frozen states with definite chain folds are thermodynamically dominant in this state. The relation of these results to thermodynamic aspects of protein folding is discussed.

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Year:  1989        PMID: 2611345     DOI: 10.1016/0301-4622(89)80058-4

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  47 in total

1.  Molecular dynamics simulation of Escherichia coli dihydrofolate reductase and its protein fragments: relative stabilities in experiment and simulations.

Authors:  Y Y Sham; B Ma; C J Tsai; R Nussinov
Journal:  Protein Sci       Date:  2001-01       Impact factor: 6.725

2.  Folding protein models with a simple hydrophobic energy function: the fundamental importance of monomer inside/outside segregation.

Authors:  A F Pereira De Araújo
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  Statistical mechanics of protein-like heteropolymers.

Authors:  R I Dima; J R Banavar; M Cieplak; A Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

4.  Multiple pathways on a protein-folding energy landscape: kinetic evidence.

Authors:  R A Goldbeck; Y G Thomas; E Chen; R M Esquerra; D S Kliger
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

5.  Statistical significance of protein structure prediction by threading.

Authors:  L A Mirny; A V Finkelstein; E I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

6.  Genetic distance and species formation in evolving populations.

Authors:  P G Higgs; B Derrida
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

7.  Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

Authors:  Tairan Yuwen; Carol Beth Post; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

8.  Collapse and hybridization of RNA: view from replica technique approach.

Authors:  Y Sh Mamasakhlisov; S Bellucci; Shura Hayryan; H Caturyan; Z Grigoryan; Chin-Kun Hu
Journal:  Eur Phys J E Soft Matter       Date:  2015-09-21       Impact factor: 1.890

9.  High-resolution protein folding with a transferable potential.

Authors:  Isaac A Hubner; Eric J Deeds; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-19       Impact factor: 11.205

10.  Lessons from the design of a novel atomic potential for protein folding.

Authors:  William W Chen; Eugene I Shakhnovich
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

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