Literature DB >> 9927488

"KARIBIN," an information resource for obtaining genomic information in a cytogenetic band.

J Zhang1, G Shen-Ong, J Ostell.   

Abstract

KARIBIN () is a karyotypic region-based integrated information resource that provides a comprehensive view of the integrated mapping and sequencing data for the human genome. A cytogenetic band is linked to a genetic or physical location using fluorescence in situ hybridization (FISH) mapping data. The genetic, physical mapping data and the sequencing data are integrated using STS markers positioned on multiple maps. For each cytogenetic band, the user can obtain the most up-to-date information that includes genetic and physical maps, human transcript gene map, YAC and PAC/BAC clone coverage, disease gene phenotype, and high throughput genomic sequences from the major human genome sequencing centers. This information provides a framework for future experiments and may accelerate the process of disease gene hunting. It is envisioned that other cytogenetic-based information such as chromosome aberrations can be linked to this framework.

Entities:  

Mesh:

Year:  1999        PMID: 9927488      PMCID: PMC310702     

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  15 in total

1.  ESTablishing a human transcript map.

Authors:  M S Boguski; G D Schuler
Journal:  Nat Genet       Date:  1995-08       Impact factor: 38.330

2.  Integration of the cytogenetic, genetic, and physical maps of the human genome by FISH mapping of CEPH YAC clones.

Authors:  P Bray-Ward; J Menninger; J Lieman; T Desai; N Mokady; A Banks; D C Ward
Journal:  Genomics       Date:  1996-02-15       Impact factor: 5.736

3.  NIH launches the final push to sequence the genome.

Authors:  E Marshall; E Pennisi
Journal:  Science       Date:  1996-04-12       Impact factor: 47.728

4.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

5.  An STS-based map of the human genome.

Authors:  T J Hudson; L D Stein; S S Gerety; J Ma; A B Castle; J Silva; D K Slonim; R Baptista; L Kruglyak; S H Xu; X Hu; A M Colbert; C Rosenberg; M P Reeve-Daly; S Rozen; L Hui; X Wu; C Vestergaard; K M Wilson; J S Bae; S Maitra; S Ganiatsas; C A Evans; M M DeAngelis; K A Ingalls; R W Nahf; L T Horton; M O Anderson; A J Collymore; W Ye; V Kouyoumjian; I S Zemsteva; J Tam; R Devine; D F Courtney; M T Renaud; H Nguyen; T J O'Connor; C Fizames; S Fauré; G Gyapay; C Dib; J Morissette; J B Orlin; B W Birren; N Goodman; J Weissenbach; T L Hawkins; S Foote; D C Page; E S Lander
Journal:  Science       Date:  1995-12-22       Impact factor: 47.728

6.  Integration of physical, genetic and cytogenetic maps of human chromosome 7: isolation and analysis of yeast artificial chromosome clones for 117 mapped genetic markers.

Authors:  E D Green; J R Idol; R M Mohr-Tidwell; V V Braden; D C Peluso; R S Fulton; H F Massa; C L Magness; A M Wilson; J Kimura
Journal:  Hum Mol Genet       Date:  1994-03       Impact factor: 6.150

7.  An International System for Human Cytogenetic Nomenclature (1985) ISCN 1985. Report of the Standing Committee on Human Cytogenetic Nomenclature.

Authors: 
Journal:  Birth Defects Orig Artic Ser       Date:  1985

8.  Genomic DNA sequence of the cystic fibrosis transmembrane conductance regulator (CFTR) gene.

Authors:  J Zielenski; R Rozmahel; D Bozon; B Kerem; Z Grzelczak; J R Riordan; J Rommens; L C Tsui
Journal:  Genomics       Date:  1991-05       Impact factor: 5.736

9.  A comprehensive human linkage map with centimorgan density. Cooperative Human Linkage Center (CHLC).

Authors:  J C Murray; K H Buetow; J L Weber; S Ludwigsen; T Scherpbier-Heddema; F Manion; J Quillen; V C Sheffield; S Sunden; G M Duyk
Journal:  Science       Date:  1994-09-30       Impact factor: 47.728

10.  Clinical and cytogenetic studies in a large (4;8) translocation family with pre- and postnatal Wolf syndrome.

Authors:  L Tranebjaerg; A Petersen; K Hove; H Rehder; M Mikkelsen
Journal:  Ann Genet       Date:  1984
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