Literature DB >> 9892659

Evidence for microscopic, long-range hydration forces for a hydrophobic amino acid.

A Pertsemlidis1, A K Soper, J M Sorenson, T Head-Gordon.   

Abstract

We have combined neutron solution scattering experiments with molecular dynamics simulation to isolate an excess experimental signal that is caused solely by N-acetyl-leucine-amide (NALA) correlations in aqueous solution. This excess signal contains information about how NALA molecule centers are correlated in water, and we show how these solute-solute correlations might be determined at dilute concentrations in the small angle region. We have tested qualitatively different pair distribution functions for NALA molecule centers-gas, cluster, and aqueous forms of gc(r)-and have found that the excess experimental signal is adequate enough to rule out gas and cluster pair distribution functions. The aqueous form of gc(r) that exhibits a solvent-separated minimum, and possibly longer-ranged correlations as well, is not only physically sound but reproduces the experimental data reasonably well. This work demonstrates that important information in the small angle region can be mined to resolve solute-solute correlations, their lengthscales, and thermodynamic consequences even at dilute concentrations. The hydration forces that operate on the microscopic scale of individual amino acid side chains, implied by the small angle scattering data, could have significant effects on the early stages of protein folding, on ligand binding, and on other intermolecular interactions.

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Year:  1999        PMID: 9892659      PMCID: PMC15162          DOI: 10.1073/pnas.96.2.481

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  7 in total

1.  Is water structure around hydrophobic groups clathrate-like?

Authors:  T Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-29       Impact factor: 11.205

2.  Direct evidence for modified solvent structure within the hydration shell of a hydrophobic amino acid.

Authors:  A Pertsemlidis; A M Saxena; A K Soper; T Head-Gordon; R M Glaeser
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

3.  "New view" of protein folding reconciled with the old through multiple unfolding simulations.

Authors:  T Lazaridis; M Karplus
Journal:  Science       Date:  1997-12-12       Impact factor: 47.728

Review 4.  Theory of protein folding: the energy landscape perspective.

Authors:  J N Onuchic; Z Luthey-Schulten; P G Wolynes
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

5.  Differences in hydration structure near hydrophobic and hydrophilic amino acids.

Authors:  T Head-Gordon; J M Sorenson; A Pertsemlidis; R M Glaeser
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

Review 6.  Theoretical studies of protein-folding thermodynamics and kinetics.

Authors:  E I Shakhnovich
Journal:  Curr Opin Struct Biol       Date:  1997-02       Impact factor: 6.809

7.  Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains.

Authors:  R L Dunbrack; M Karplus
Journal:  Nat Struct Biol       Date:  1994-05
  7 in total
  5 in total

1.  Hydrophobe-water interactions: methane as a model.

Authors:  F Despa; R S Berry
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

2.  Alteration of water structure by peptide clusters revealed by neutron scattering in the small-angle region (below 1 Å(-1)).

Authors:  Isabella Daidone; Claudio Iacobucci; Sylvia E McLain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

3.  Evidence for water structuring forces between surfaces.

Authors:  Christopher Stanley; Donald C Rau
Journal:  Curr Opin Colloid Interface Sci       Date:  2011-12       Impact factor: 6.448

4.  Molecular view of water dynamics near model peptides.

Authors:  Daniela Russo; Rajesh K Murarka; John R D Copley; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2005-07-07       Impact factor: 2.991

5.  Water in protein structure prediction.

Authors:  Garegin A Papoian; Johan Ulander; Michael P Eastwood; Zaida Luthey-Schulten; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-26       Impact factor: 11.205

  5 in total

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