Literature DB >> 23062344

Alteration of water structure by peptide clusters revealed by neutron scattering in the small-angle region (below 1 Å(-1)).

Isabella Daidone1, Claudio Iacobucci, Sylvia E McLain, Jeremy C Smith.   

Abstract

Solution scattering of neutrons and x-rays can provide direct information on local interactions of importance for biomolecular folding and structure. Here, neutron scattering experiments are combined with molecular-dynamics simulation to interpret the scattering signal of a series of dipeptides with varying degrees of hydrophobicity (GlyAla, GlyPro, and AlaPro) in concentrated aqueous solution (1:20 solute/water ratio) in which the peptides form large segregates (up to 50-60 amino acids). Two main results are found: 1), the shift to lower Q of the so-called water-ring peak (Q ≈ 2 Å(-1)) arises mainly from an overlap of water-peptide and peptide-peptide correlations in the region of 1.3 <Q< 2 Å(-1), rather than from a shift of the water signal induced by the presence of the clusters; and 2), in the low-Q region (Q ≈ 0.6 Å(-1)) a positive peak is observed originating from both the solute-solute correlations and changes in the water structure induced by the formation of the clusters. In particular, the water molecules are found to be more connected than in the bulk with hydrogen-bonding directions tangential to the exposed hydrophobic surfaces, and this effect increases with increasing peptide hydrophobicity. This work demonstrates that important information on the (hydrophobic) hydration of biomolecules can be obtained in the very-small-angle region.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23062344      PMCID: PMC3471469          DOI: 10.1016/j.bpj.2012.08.010

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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3.  Hydrophobicity of protein surfaces: Separating geometry from chemistry.

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Review 4.  Dewetting and hydrophobic interaction in physical and biological systems.

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5.  Charge-based interactions between peptides observed as the dominant force for association in aqueous solution.

Authors:  Sylvia E McLain; Alan K Soper; Isabella Daidone; Jeremy C Smith; Anthony Watts
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

6.  Fingerprints of amorphous icelike behavior in the vibrational density of states of protein hydration water.

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7.  Direct evidence for modified solvent structure within the hydration shell of a hydrophobic amino acid.

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8.  Observation of pyridine aggregation in aqueous solution using neutron scattering experiments and MD simulations.

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Review 9.  Water in nonpolar confinement: from nanotubes to proteins and beyond.

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10.  The hydration of the neurotransmitter acetylcholine in aqueous solution.

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Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

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