Literature DB >> 9032061

Theoretical studies of protein-folding thermodynamics and kinetics.

E I Shakhnovich1.   

Abstract

Recently, protein-folding models have advanced to the point where folding simulations of protein-like chains of reasonable length (up to 125 amino acids) are feasible, and the major physical features of folding proteins, such as cooperativity in thermodynamics and nucleation mechanisms in kinetics, can be reproduced. This has allowed deep insight into the physical mechanism of folding, including the solution of the so-called 'Levinthal paradox'.

Mesh:

Year:  1997        PMID: 9032061     DOI: 10.1016/s0959-440x(97)80005-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  44 in total

1.  Chain entropy: spoiler or benefactor in pattern recognition?

Authors:  M Muthukumar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  An amino acid code for protein folding.

Authors:  J Rumbley; L Hoang; L Mayne; S W Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

3.  Deciphering common failures in molecular docking of ligand-protein complexes.

Authors:  G M Verkhivker; D Bouzida; D K Gehlhaar; P A Rejto; S Arthurs; A B Colson; S T Freer; V Larson; B A Luty; T Marrone; P W Rose
Journal:  J Comput Aided Mol Des       Date:  2000-11       Impact factor: 3.686

4.  A simple model for calculating the kinetics of protein folding from three-dimensional structures.

Authors:  V Muñoz; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

5.  Entropic barriers, transition states, funnels, and exponential protein folding kinetics: a simple model.

Authors:  D J Bicout; A Szabo
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

6.  Folding protein models with a simple hydrophobic energy function: the fundamental importance of monomer inside/outside segregation.

Authors:  A F Pereira De Araújo
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

7.  Sequence evolution and the mechanism of protein folding.

Authors:  A R Ortiz; J Skolnick
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

8.  Understanding beta-hairpin formation by molecular dynamics simulations of unfolding.

Authors:  J Lee; S Shin
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

9.  Top-down free-energy minimization on protein potential energy landscapes.

Authors:  B W Church; D Shalloway
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

Review 10.  Searching for "downhill scenarios" in protein folding.

Authors:  W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

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