Literature DB >> 9860835

The hydrogen-bonding network of water molecules and the peptide backbone in the region connecting Asp83, Gly120, and Glu113 in bovine rhodopsin.

T Nagata1, A Terakita, H Kandori, Y Shichida, A Maeda.   

Abstract

Difference Fourier transform infrared spectra were recorded between mutants of rhodopsin and their batho products. The pigments studied were single and combined mutants of intramembrane residues of bovine rhodopsin: Asp83, Glu113, Gly120, Gly121, and Glu122. Previous studies [Nagata, T., Terakita, A., Kandori, H., Kojima, D., Shichida, Y., and Maeda, A. (1997) Biochemistry 36, 6164-6170] showed that one of the water molecules which undergoes structural changes in this process forms hydrogen bonds with Glu113 and the Schiff base, and that another water molecule is linked to this structure through the peptide backbone. The present results show that this water molecule is located at the place that is affected by the replacements of Asp83 and Gly120 but only slightly by Gly121 and not at all by Glu122. Asp83 and Gly120 are close to each other, in view of the observations that the carboxylic C=O stretching vibration of Asp83 is affected by the G120A replacement and that each replacement affects the common peptide carbonyl groups. Our results suggest that these residues in the middle of helices B and C are linked-through a hydrogen-bonding network composed of water and the peptide backbone-with the region around Glu113.

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Year:  1998        PMID: 9860835     DOI: 10.1021/bi9810149

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Molecular genetics and the evolution of ultraviolet vision in vertebrates.

Authors:  Y Shi; F B Radlwimmer; S Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

2.  Proton movement and photointermediate kinetics in rhodopsin mutants.

Authors:  James W Lewis; Istvan Szundi; Manija A Kazmi; Thomas P Sakmar; David S Kliger
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

3.  Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.

Authors:  Judy E Kim; Duohai Pan; Richard A Mathies
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

4.  Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds.

Authors:  J E Kim; D W McCamant; L Zhu; R A Mathies
Journal:  J Phys Chem B       Date:  2001-02-15       Impact factor: 2.991

5.  Molecular properties of rhodopsin and rod function.

Authors:  Hiroo Imai; Vladimir Kefalov; Keisuke Sakurai; Osamu Chisaka; Yoshiki Ueda; Akishi Onishi; Takefumi Morizumi; Yingbin Fu; Kazuhisa Ichikawa; Kei Nakatani; Yoshihito Honda; Jeannie Chen; King-Wai Yau; Yoshinori Shichida
Journal:  J Biol Chem       Date:  2006-12-28       Impact factor: 5.157

6.  Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant.

Authors:  Megan N Sandberg; Jordan A Greco; Nicole L Wagner; Tabitha L Amora; Lavoisier A Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  SOJ Biochem       Date:  2014

7.  Glutamic acid 181 is negatively charged in the bathorhodopsin photointermediate of visual rhodopsin.

Authors:  Megan N Sandberg; Tabitha L Amora; Lavoisier S Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  J Am Chem Soc       Date:  2011-02-14       Impact factor: 15.419

8.  Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors.

Authors:  Thomas E Angel; Mark R Chance; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

9.  Intramolecular interactions that induce helical rearrangement upon rhodopsin activation: light-induced structural changes in metarhodopsin IIa probed by cysteine S-H stretching vibrations.

Authors:  Yoichi Yamazaki; Tomoko Nagata; Akihisa Terakita; Hideki Kandori; Yoshinori Shichida; Yasushi Imamoto
Journal:  J Biol Chem       Date:  2014-04-01       Impact factor: 5.157

10.  Analysis of Conserved Glutamate and Aspartate Residues in Drosophila Rhodopsin 1 and Their Influence on Spectral Tuning.

Authors:  Lijun Zheng; David M Farrell; Ruth M Fulton; Eve E Bagg; Ernesto Salcedo; Meridee Manino; Steven G Britt
Journal:  J Biol Chem       Date:  2015-07-20       Impact factor: 5.157

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