Literature DB >> 9847146

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

S A Chervitz1, E T Hester, C A Ball, K Dolinski, S S Dwight, M A Harris, G Juvik, A Malekian, S Roberts, T Roe, C Scafe, M Schroeder, G Sherlock, S Weng, Y Zhu, J M Cherry, D Botstein.   

Abstract

The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. The latest protein structure and comparison tools available at SGD are presented here. With the completion of the yeast sequence and the Caenorhabditis elegans sequence soon to follow, comparison of proteins from complete eukaryotic proteomes will be an extremely powerful way to learn more about a particular protein's structure, its function, and its relationships with other proteins. SGD can be accessed through the World Wide Web at http://genome-www.stanford.edu/Saccharomyces/

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Year:  1999        PMID： 9847146      PMCID： PMC148101          DOI： 10.1093/nar/27.1.74

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  23 in total

1.  MODBASE, a database of annotated comparative protein structure models.

Authors:  R Sánchez; U Pieper; N Mirković; P I de Bakker; E Wittenstein; A Sali
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  XREFdb: cross-referencing the genetics and genes of mammals and model organisms.

Authors:  R Ploger; J Zhang; D Bassett; R Reeves; P Hieter; M Boguski; F Spencer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The effect of nucleotide bias upon the composition and prediction of transmembrane helices.

Authors:  T J Stevens; I T Arkin
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

4.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

5.  DIAN: a novel algorithm for genome ontological classification.

Authors:  Y Pouliot; J Gao; Q J Su; G G Liu; X B Ling
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

6.  Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins.

Authors:  T Ito; K Tashiro; S Muta; R Ozawa; T Chiba; M Nishizawa; K Yamamoto; S Kuhara; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

7.  TRIPLES: a database of gene function in Saccharomyces cerevisiae.

Authors:  A Kumar; K H Cheung; P Ross-Macdonald; P S Coelho; P Miller; M Snyder
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

8.  Integrating functional genomic information into the Saccharomyces genome database.

Authors:  C A Ball; K Dolinski; S S Dwight; M A Harris; L Issel-Tarver; A Kasarskis; C R Scafe; G Sherlock; G Binkley; H Jin; M Kaloper; S D Orr; M Schroeder; S Weng; Y Zhu; D Botstein; J M Cherry
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

9.  GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. The Gene Expresison Database group.

Authors:  M Ringwald; J T Eppig; J A Kadin; J E Richardson
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

10.  MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status.

Authors:  M Attimonelli; N Altamura; R Benne; A Brennicke; J M Cooper; D D'Elia; A Montalvo; B Pinto; M De Robertis; P Golik; V Knoop; C Lanave; J Lazowska; F Licciulli; B S Malladi; F Memeo; M Monnerot; R Pasimeni; S Pilbout; A H Schapira; P Sloof; C Saccone
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971
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