Literature DB >> 10592198

XREFdb: cross-referencing the genetics and genes of mammals and model organisms.

R Ploger1, J Zhang, D Bassett, R Reeves, P Hieter, M Boguski, F Spencer.   

Abstract

XREFdb supports the investigation of protein function in the context of information available through work in multiple organisms. In addition to facilitating the association of functional data among known genes from multiple organisms, XREFdb has developed strategies that provide access to information associated with as-yet unstudied genes. The database organizes protein similarity and genetic map positional information from diverse sources in the public domain to facilitate investigator evaluation of potential functional significance. XREFdb is found at URL www.ncbi.nlm.nih.gov/XREFdb

Mesh:

Year:  2000        PMID: 10592198      PMCID: PMC102470          DOI: 10.1093/nar/28.1.120

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

Review 1.  Pieces of the puzzle: expressed sequence tags and the catalog of human genes.

Authors:  G D Schuler
Journal:  J Mol Med (Berl)       Date:  1997-10       Impact factor: 4.599

Review 2.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  dbEST--database for "expressed sequence tags".

Authors:  M S Boguski; T M Lowe; C M Tolstoshev
Journal:  Nat Genet       Date:  1993-08       Impact factor: 38.330

5.  The turning point in genome research.

Authors:  M S Boguski
Journal:  Trends Biochem Sci       Date:  1995-08       Impact factor: 13.807

6.  Maps from two interspecific backcross DNA panels available as a community genetic mapping resource.

Authors:  L B Rowe; J H Nadeau; R Turner; W N Frankel; V A Letts; J T Eppig; M S Ko; S J Thurston; E H Birkenmeier
Journal:  Mamm Genome       Date:  1994-05       Impact factor: 2.957

7.  Genome cross-referencing and XREFdb: implications for the identification and analysis of genes mutated in human disease.

Authors:  D E Bassett; M S Boguski; F Spencer; R Reeves; S Kim; T Weaver; P Hieter
Journal:  Nat Genet       Date:  1997-04       Impact factor: 38.330

8.  The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data.

Authors:  P E Hodges; A H McKee; B P Davis; W E Payne; J I Garrels
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

9.  Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

Authors:  S A Chervitz; E T Hester; C A Ball; K Dolinski; S S Dwight; M A Harris; G Juvik; A Malekian; S Roberts; T Roe; C Scafe; M Schroeder; G Sherlock; S Weng; Y Zhu; J M Cherry; D Botstein
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

10.  A physical map of 30,000 human genes.

Authors:  P Deloukas; G D Schuler; G Gyapay; E M Beasley; C Soderlund; P Rodriguez-Tomé; L Hui; T C Matise; K B McKusick; J S Beckmann; S Bentolila; M Bihoreau; B B Birren; J Browne; A Butler; A B Castle; N Chiannilkulchai; C Clee; P J Day; A Dehejia; T Dibling; N Drouot; S Duprat; C Fizames; S Fox; S Gelling; L Green; P Harrison; R Hocking; E Holloway; S Hunt; S Keil; P Lijnzaad; C Louis-Dit-Sully; J Ma; A Mendis; J Miller; J Morissette; D Muselet; H C Nusbaum; A Peck; S Rozen; D Simon; D K Slonim; R Staples; L D Stein; E A Stewart; M A Suchard; T Thangarajah; N Vega-Czarny; C Webber; X Wu; J Hudson; C Auffray; N Nomura; J M Sikela; M H Polymeropoulos; M R James; E S Lander; T J Hudson; R M Myers; D R Cox; J Weissenbach; M S Boguski; D R Bentley
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

  10 in total
  1 in total

1.  YPL.db: the Yeast Protein Localization database.

Authors:  Georg Habeler; Klaus Natter; Gerhard G Thallinger; Matthew E Crawford; Sepp D Kohlwein; Zlatko Trajanoski
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

  1 in total

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