Literature DB >> 10592187

TRIPLES: a database of gene function in Saccharomyces cerevisiae.

A Kumar1, K H Cheung, P Ross-Macdonald, P S Coelho, P Miller, M Snyder.   

Abstract

Using a novel multipurpose mini-transposon, we have generated a collection of defined mutant alleles for the analysis of disruption phenotypes, protein localization, and gene expression in Saccharomyces cerevisiae. To catalog this unique data set, we have developed TRIPLES, a Web-accessible database of TRansposon-Insertion Phenotypes, Localization and Expression in Saccharomyces. Encompassing over 250 000 data points, TRIPLES provides convenient access to information from nearly 7800 transposon-mutagenized yeast strains; within TRIPLES, complete data reports of each strain may be viewed in table format, or if desired, downloaded as tab-delimited text files. Each report contains external links to corresponding entries within the Saccharomyces Genome Database and International Nucleic Acid Sequence Data Library (GenBank). Unlike other yeast databases, TRIPLES also provides on-line order forms linked to each clone report; users may immediately request any desired strain free-of-charge by submitting a completed form. In addition to presenting a wealth of information for over 2300 open reading frames, TRIPLES constitutes an important medium for the distribution of useful reagents throughout the yeast scientific community. Maintained by the Yale Genome Analysis Center, TRIPLES may be accessed at http://ycmi.med.yale.edu/ygac/triples.htm

Entities:  

Mesh:

Substances:

Year:  2000        PMID: 10592187      PMCID: PMC102388          DOI: 10.1093/nar/28.1.81

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens.

Authors:  M Fromont-Racine; J C Rain; P Legrain
Journal:  Nat Genet       Date:  1997-07       Impact factor: 38.330

2.  Towards a complete understanding of how a simple eukaryotic cell works.

Authors:  M Johnston
Journal:  Trends Genet       Date:  1996-07       Impact factor: 11.639

3.  Characterization of the yeast transcriptome.

Authors:  V E Velculescu; L Zhang; W Zhou; J Vogelstein; M A Basrai; D E Bassett; P Hieter; B Vogelstein; K W Kinzler
Journal:  Cell       Date:  1997-01-24       Impact factor: 41.582

4.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

Authors:  E A Winzeler; D D Shoemaker; A Astromoff; H Liang; K Anderson; B Andre; R Bangham; R Benito; J D Boeke; H Bussey; A M Chu; C Connelly; K Davis; F Dietrich; S W Dow; M El Bakkoury; F Foury; S H Friend; E Gentalen; G Giaever; J H Hegemann; T Jones; M Laub; H Liao; N Liebundguth; D J Lockhart; A Lucau-Danila; M Lussier; N M'Rabet; P Menard; M Mittmann; C Pai; C Rebischung; J L Revuelta; L Riles; C J Roberts; P Ross-MacDonald; B Scherens; M Snyder; S Sookhai-Mahadeo; R K Storms; S Véronneau; M Voet; G Volckaert; T R Ward; R Wysocki; G S Yen; K Yu; K Zimmermann; P Philippsen; M Johnston; R W Davis
Journal:  Science       Date:  1999-08-06       Impact factor: 47.728

5.  Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs.

Authors:  W M Olivas; D Muhlrad; R Parker
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

6.  A multipurpose transposon system for analyzing protein production, localization, and function in Saccharomyces cerevisiae.

Authors:  P Ross-Macdonald; A Sheehan; G S Roeder; M Snyder
Journal:  Proc Natl Acad Sci U S A       Date:  1997-01-07       Impact factor: 11.205

7.  Functional analysis of the genes of yeast chromosome V by genetic footprinting.

Authors:  V Smith; K N Chou; D Lashkari; D Botstein; P O Brown
Journal:  Science       Date:  1996-12-20       Impact factor: 47.728

8.  The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data.

Authors:  P E Hodges; A H McKee; B P Davis; W E Payne; J I Garrels
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

9.  Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.

Authors:  S A Chervitz; E T Hester; C A Ball; K Dolinski; S S Dwight; M A Harris; G Juvik; A Malekian; S Roberts; T Roe; C Scafe; M Schroeder; G Sherlock; S Weng; Y Zhu; J M Cherry; D Botstein
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

10.  Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae.

Authors:  N Burns; B Grimwade; P B Ross-Macdonald; E Y Choi; K Finberg; G S Roeder; M Snyder
Journal:  Genes Dev       Date:  1994-05-01       Impact factor: 11.361

  10 in total
  27 in total

1.  Quantitative target display: a method to screen yeast mutants conferring quantitative phenotypes by 'mutant DNA fingerprints'.

Authors:  V M Sharma; R Chopra; I Ghosh; K Ganesan
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

2.  Opportunities at the intersection of bioinformatics and health informatics: a case study.

Authors:  P L Miller
Journal:  J Am Med Inform Assoc       Date:  2000 Sep-Oct       Impact factor: 4.497

3.  Phenotypic analysis of genes encoding yeast zinc cluster proteins.

Authors:  B Akache; K Wu; B Turcotte
Journal:  Nucleic Acids Res       Date:  2001-05-15       Impact factor: 16.971

4.  Evolution in Saccharomyces cerevisiae: identification of mutations increasing fitness in laboratory populations.

Authors:  Victoria M Blanc; Julian Adams
Journal:  Genetics       Date:  2003-11       Impact factor: 4.562

5.  LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system.

Authors:  Detlev Bannasch; Alexander Mehrle; Karl-Heinz Glatting; Rainer Pepperkok; Annemarie Poustka; Stefan Wiemann
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 6.  From quantitative microscopy to automated image understanding.

Authors:  Kai Huang; Robert F Murphy
Journal:  J Biomed Opt       Date:  2004 Sep-Oct       Impact factor: 3.170

Review 7.  Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics.

Authors:  Xiang Chen; Meel Velliste; Robert F Murphy
Journal:  Cytometry A       Date:  2006-07       Impact factor: 4.355

8.  The TRIPLES database: a community resource for yeast molecular biology.

Authors:  Anuj Kumar; Kei-Hoi Cheung; Nick Tosches; Peter Masiar; Yang Liu; Perry Miller; Michael Snyder
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

9.  Flytrap, a database documenting a GFP protein-trap insertion screen in Drosophila melanogaster.

Authors:  Reed J Kelso; Michael Buszczak; Ana T Quiñones; Claudia Castiblanco; Stacy Mazzalupo; Lynn Cooley
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Saccharomyces cerevisiae ubiquitin-like protein Rub1 conjugates to cullin proteins Rtt101 and Cul3 in vivo.

Authors:  Jose M Laplaza; Magnolia Bostick; Derek T Scholes; M Joan Curcio; Judy Callis
Journal:  Biochem J       Date:  2004-01-15       Impact factor: 3.857

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.