Literature DB >> 9788994

On the electronic nature of low-barrier hydrogen bonds in enzymatic reactions.

B Schiøtt1, B B Iversen, G K Madsen, F K Larsen, T C Bruice.   

Abstract

The electronic nature of low-barrier hydrogen bonds (LBHBs) in enzymatic reactions is discussed based on combined low temperature neutron and x-ray diffraction experiments and on high level ab initio calculations by using the model substrate benzoylacetone. This molecule has a LBHB, as the intramolecular hydrogen bond is described by a double-well potential with a small barrier for hydrogen transfer. From an "atoms in molecules" analysis of the electron density, it is found that the hydrogen atom is stabilized by covalent bonds to both oxygens. Large atomic partial charges on the hydrogen-bonded atoms are found experimentally and theoretically. Therefore, the hydrogen bond gains stabilization from both covalency and from the normal electrostatic interactions found for long, weak hydrogen bonds. Based on comparisons with other systems having short-strong hydrogen bonds or LBHBs, it is proposed that all short-strong and LBHB systems possess similar electronic features of the hydrogen-bonded region, namely polar covalent bonds between the hydrogen atom and both heteroatoms in question.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9788994      PMCID: PMC23598          DOI: 10.1073/pnas.95.22.12799

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Low barrier hydrogen bond is absent in the catalytic triads in the ground state but Is present in a transition-state complex in the prolyl oligopeptidase family of serine proteases.

Authors:  A Kahyaoglu; K Haghjoo; F Guo; F Jordan; C Kettner; F Felföldi; L Polgár
Journal:  J Biol Chem       Date:  1997-10-10       Impact factor: 5.157

Review 2.  Low-barrier hydrogen bonds and low fractionation factor bases in enzymatic reactions.

Authors:  W W Cleland
Journal:  Biochemistry       Date:  1992-01-21       Impact factor: 3.162

3.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

4.  A new concept for the mechanism of action of chymotrypsin: the role of the low-barrier hydrogen bond.

Authors:  C S Cassidy; J Lin; P A Frey
Journal:  Biochemistry       Date:  1997-04-15       Impact factor: 3.162

5.  Understanding the rates of certain enzyme-catalyzed reactions: proton abstraction from carbon acids, acyl-transfer reactions, and displacement reactions of phosphodiesters.

Authors:  J A Gerlt; P G Gassman
Journal:  Biochemistry       Date:  1993-11-16       Impact factor: 3.162

6.  On low-barrier hydrogen bonds and enzyme catalysis.

Authors:  A Warshel; A Papazyan; P A Kollman
Journal:  Science       Date:  1995-07-07       Impact factor: 47.728

7.  Low-barrier hydrogen bonds and enzymic catalysis.

Authors:  W W Cleland; M M Kreevoy
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

8.  NMR evidence for the participation of a low-barrier hydrogen bond in the mechanism of delta 5-3-ketosteroid isomerase.

Authors:  Q Zhao; C Abeygunawardana; P Talalay; A S Mildvan
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-06       Impact factor: 11.205

9.  Low-barrier hydrogen bonding in molecular complexes analogous to histidine and aspartate in the catalytic triad of serine proteases.

Authors:  J B Tobin; S A Whitt; C S Cassidy; P A Frey
Journal:  Biochemistry       Date:  1995-05-30       Impact factor: 3.162

10.  A low-barrier hydrogen bond in the catalytic triad of serine proteases.

Authors:  P A Frey; S A Whitt; J B Tobin
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

View more
  13 in total

1.  Field effects induce bathochromic shifts in xanthene dyes.

Authors:  Martha Sibrian-Vazquez; Jorge O Escobedo; Mark Lowry; Frank R Fronczek; Robert M Strongin
Journal:  J Am Chem Soc       Date:  2012-06-05       Impact factor: 15.419

2.  Anion Cluster: Assembly of Dihydrogen Phosphates for the Formation of a Cyclic Anion Octamer.

Authors:  Md Alamgir Hossain; Muhammet Işıklan; Avijit Pramanik; Musabbir A Saeed; Frank R Fronczek
Journal:  Cryst Growth Des       Date:  2012-02-01       Impact factor: 4.076

3.  Ab initio molecular dynamics studies on HIV-1 reverse transcriptase triphosphate binding site: implications for nucleoside-analog drug resistance.

Authors:  F Alber; P Carloni
Journal:  Protein Sci       Date:  2000-12       Impact factor: 6.725

4.  Biophysical limits of protein-ligand binding.

Authors:  Richard D Smith; Alaina L Engdahl; James B Dunbar; Heather A Carlson
Journal:  J Chem Inf Model       Date:  2012-07-18       Impact factor: 4.956

5.  Catalytic role of enzymes: short strong H-bond-induced partial proton shuttles and charge redistributions.

Authors:  K S Kim; K S Oh; J Y Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

6.  An alternate proton acceptor for excited-state proton transfer in green fluorescent protein: rewiring GFP.

Authors:  Deborah Stoner-Ma; Andrew A Jaye; Kate L Ronayne; Jérôme Nappa; Stephen R Meech; Peter J Tonge
Journal:  J Am Chem Soc       Date:  2008-01-08       Impact factor: 15.419

7.  Sub-picomolar Inhibition of HIV-1 Protease with a Boronic Acid.

Authors:  Ian W Windsor; Michael J Palte; John C Lukesh; Brian Gold; Katrina T Forest; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2018-10-22       Impact factor: 15.419

Review 8.  H-Bond: Τhe Chemistry-Biology H-Bridge.

Authors:  George N Pairas; Petros G Tsoungas
Journal:  ChemistrySelect       Date:  2016-09-20       Impact factor: 2.109

9.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

10.  Methylpiperidinium Iodides as Novel Antagonists for α7 Nicotinic Acetylcholine Receptors.

Authors:  Jhon J López; Jesús García-Colunga; Edwin G Pérez; Angélica Fierro
Journal:  Front Pharmacol       Date:  2018-07-10       Impact factor: 5.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.