Literature DB >> 9761466

Class-directed structure determination: foundation for a protein structure initiative.

T C Terwilliger1, G Waldo, T S Peat, J M Newman, K Chu, J Berendzen.   

Abstract

The recent sequencing of many complete genomes, combined with the development of methods that allow rapid structure determination for many proteins, has changed the way in which protein structure determinations can be approached. One-by-one determinations of individual protein structures will soon be augmented by class-directed structure analyses in which a group of proteins is targeted and structures of representative members are determined and used to represent the entire group. Such a shift in approach would be the foundation for a broad protein structure initiative targeting classes of proteins important for biotechnology and for a fundamental understanding of protein function.

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Year:  1998        PMID: 9761466      PMCID: PMC2144164          DOI: 10.1002/pro.5560070901

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  17 in total

1.  A method to identify protein sequences that fold into a known three-dimensional structure.

Authors:  J U Bowie; R Lüthy; D Eisenberg
Journal:  Science       Date:  1991-07-12       Impact factor: 47.728

2.  Towards a paradigm shift in biology.

Authors:  W Gilbert
Journal:  Nature       Date:  1991-01-10       Impact factor: 49.962

3.  Variations on a theme: cataloging human DNA sequence variation.

Authors:  F S Collins; M S Guyer; A Charkravarti
Journal:  Science       Date:  1997-11-28       Impact factor: 47.728

4.  Progress of 1D protein structure prediction at last.

Authors:  B Rost; C Sander
Journal:  Proteins       Date:  1995-11

5.  Threading your way to protein function.

Authors:  S M Firestine; A E Nixon; S J Benkovic
Journal:  Chem Biol       Date:  1996-10

6.  All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination.

Authors:  M De Maeyer; J Desmet; I Lasters
Journal:  Fold Des       Date:  1997

Review 7.  The biotechnology and applications of antibody engineering.

Authors:  R Rapley
Journal:  Mol Biotechnol       Date:  1995-04       Impact factor: 2.695

Review 8.  Structure-based drug design: progress, results and challenges.

Authors:  C L Verlinde; W G Hol
Journal:  Structure       Date:  1994-07-15       Impact factor: 5.006

9.  Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.

Authors:  C M Fraser; S Casjens; W M Huang; G G Sutton; R Clayton; R Lathigra; O White; K A Ketchum; R Dodson; E K Hickey; M Gwinn; B Dougherty; J F Tomb; R D Fleischmann; D Richardson; J Peterson; A R Kerlavage; J Quackenbush; S Salzberg; M Hanson; R van Vugt; N Palmer; M D Adams; J Gocayne; J Weidman; T Utterback; L Watthey; L McDonald; P Artiach; C Bowman; S Garland; C Fuji; M D Cotton; K Horst; K Roberts; B Hatch; H O Smith; J C Venter
Journal:  Nature       Date:  1997-12-11       Impact factor: 49.962

10.  Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Authors:  C J Bult; O White; G J Olsen; L Zhou; R D Fleischmann; G G Sutton; J A Blake; L M FitzGerald; R A Clayton; J D Gocayne; A R Kerlavage; B A Dougherty; J F Tomb; M D Adams; C I Reich; R Overbeek; E F Kirkness; K G Weinstock; J M Merrick; A Glodek; J L Scott; N S Geoghagen; J C Venter
Journal:  Science       Date:  1996-08-23       Impact factor: 47.728

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  24 in total

1.  MODBASE, a database of annotated comparative protein structure models.

Authors:  R Sánchez; U Pieper; N Mirković; P I de Bakker; E Wittenstein; A Sali
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Estimating the probability for a protein to have a new fold: A statistical computational model.

Authors:  E Portugaly; M Linial
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

3.  Protein structure determination using a database of interatomic distance probabilities.

Authors:  M E Wall; S Subramaniam; G N Phillips
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

4.  Helix-bundle membrane protein fold templates.

Authors:  J U Bowie
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  An approach for high-throughput structure determination of proteins by NMR spectroscopy.

Authors:  A Medek; E T Olejniczak; R P Meadows; S W Fesik
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

6.  Static light scattering studies of OmpF porin: implications for integral membrane protein crystallization.

Authors:  C Hitscherich; J Kaplan; M Allaman; J Wiencek; P J Loll
Journal:  Protein Sci       Date:  2000-08       Impact factor: 6.725

7.  Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome.

Authors:  S Balasubramanian; T Schneider; M Gerstein; L Regan
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

8.  Coverage of protein sequence space by current structural genomics targets.

Authors:  Nicholas O'Toole; Stéphane Raymond; Miroslaw Cygler
Journal:  J Struct Funct Genomics       Date:  2003

9.  Future directions in protein function prediction.

Authors:  Ihsan A Shehadi; Huyuan Yang; Mary Jo Ondrechen
Journal:  Mol Biol Rep       Date:  2002-12       Impact factor: 2.316

10.  Growth of novel protein structural data.

Authors:  Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

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