Literature DB >> 10975577

Static light scattering studies of OmpF porin: implications for integral membrane protein crystallization.

C Hitscherich1, J Kaplan, M Allaman, J Wiencek, P J Loll.   

Abstract

Integral membrane proteins carry out some of the most important functions of living cells, yet relatively few details are known about their structures. This is due, in large part, to the difficulties associated with preparing membrane protein crystals suitable for X-ray diffraction analysis. Mechanistic studies of membrane protein crystallization may provide insights that will aid in determining future membrane protein structures. Accordingly, the solution behavior of the bacterial outer membrane protein OmpF porin was studied by static light scattering under conditions favorable for crystal growth. The second osmotic virial coefficient (B22) was found to be a predictor of the crystallization behavior of porin, as has previously been found for soluble proteins. Both tetragonal and trigonal porin crystals were found to form only within a narrow window of B22 values located at approximately -0.5 to -2 X 10(-4) mol mL g(-2), which is similar to the "crystallization slot" observed for soluble proteins. The B22 behavior of protein-free detergent micelles proved very similar to that of porin-detergent complexes, suggesting that the detergent's contribution dominates the behavior of protein-detergent complexes under crystallizing conditions. This observation implies that, for any given detergent, it may be possible to construct membrane protein crystallization screens of general utility by manipulating the solution properties so as to drive detergent B22 values into the crystallization slot. Such screens would limit the screening effort to the detergent systems most likely to yield crystals, thereby minimizing protein requirements and improving productivity.

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Year:  2000        PMID: 10975577      PMCID: PMC2144733          DOI: 10.1110/ps.9.8.1559

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  14 in total

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Journal:  J Struct Biol       Date:  1990 Jul-Sep       Impact factor: 2.867

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Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

Review 3.  Class-directed structure determination: foundation for a protein structure initiative.

Authors:  T C Terwilliger; G Waldo; T S Peat; J M Newman; K Chu; J Berendzen
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

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Authors:  E Wallin; G von Heijne
Journal:  Protein Sci       Date:  1998-04       Impact factor: 6.725

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Authors:  R M Garavito; D Picot; P J Loll
Journal:  J Bioenerg Biomembr       Date:  1996-02       Impact factor: 2.945

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Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

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Journal:  J Biol Chem       Date:  1974-12-25       Impact factor: 5.157

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Journal:  Biochim Biophys Acta       Date:  1980-11-20

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Authors:  E Pebay-Peyroula; R M Garavito; J P Rosenbusch; M Zulauf; P A Timmins
Journal:  Structure       Date:  1995-10-15       Impact factor: 5.006

10.  Structure of the detergent phase and protein-detergent interactions in crystals of the wild-type (strain Y) Rhodobacter sphaeroides photochemical reaction center.

Authors:  M Roth; B Arnoux; A Ducruix; F Reiss-Husson
Journal:  Biochemistry       Date:  1991-10-01       Impact factor: 3.162

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  12 in total

1.  Rapid measurement of protein osmotic second virial coefficients by self-interaction chromatography.

Authors:  Peter M Tessier; Abraham M Lenhoff; Stanley I Sandler
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Colicin occlusion of OmpF and TolC channels: outer membrane translocons for colicin import.

Authors:  Stanislav D Zakharov; Veronika Y Eroukova; Tatyana I Rokitskaya; Mariya V Zhalnina; Onkar Sharma; Patrick J Loll; Helen I Zgurskaya; Yuri N Antonenko; William A Cramer
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

Review 3.  The significance of G protein-coupled receptor crystallography for drug discovery.

Authors:  John A Salon; David T Lodowski; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2011-12       Impact factor: 25.468

4.  When worlds colloid.

Authors:  Michael C Wiener
Journal:  Protein Sci       Date:  2006-12       Impact factor: 6.725

Review 5.  Membrane proteins, detergents and crystals: what is the state of the art?

Authors:  Patrick J Loll
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

6.  Use of dynamic light scattering and small-angle X-ray scattering to characterize new surfactants in solution conditions for membrane-protein crystallization.

Authors:  Mohamed Dahani; Laurie Anne Barret; Simon Raynal; Colette Jungas; Pétra Pernot; Ange Polidori; Françoise Bonneté
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

7.  A comparative study of monoclonal antibodies. 1. Phase behavior and protein-protein interactions.

Authors:  Rachael A Lewus; Nicholas E Levy; Abraham M Lenhoff; Stanley I Sandler
Journal:  Biotechnol Prog       Date:  2014-11-19

8.  Rationalization of membrane protein crystallization with polyethylene glycol using a simple depletion model.

Authors:  Shinpei Tanaka; Mitsuo Ataka; Kazuo Onuma; Tomomi Kubota
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

9.  Effects of additives on surfactant phase behavior relevant to bacteriorhodopsin crystallization.

Authors:  Bryan W Berger; Colleen M Gendron; Abraham M Lenhoff; Eric W Kaler
Journal:  Protein Sci       Date:  2006-11-06       Impact factor: 6.725

10.  In vitro dimerization of the bovine papillomavirus E5 protein transmembrane domain.

Authors:  Joanne Oates; Matthew Hicks; Timothy R Dafforn; Daniel DiMaio; Ann M Dixon
Journal:  Biochemistry       Date:  2008-08-02       Impact factor: 3.162

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