Literature DB >> 9731776

Insights into transition state stabilization of the beta-1,4-glycosidase Cex by covalent intermediate accumulation in active site mutants.

V Notenboom1, C Birsan, M Nitz, D R Rose, R A Warren, S G Withers.   

Abstract

The catalytic mechanism of 'retaining' beta-glycosidases has been the subject of considerable interest and debate for many years. The visualization of a covalent glycosyl enzyme intermediate by X-ray crystallography was first accomplished with a saccharide substrate substituted with fluorine at its 2-position. The structure implicated major roles for residue His 205 and for the 2-hydroxyl position of the proximal saccharide in binding and catalysis. Here we have studied the kinetic behavior of various His 205 mutants. One of these mutants, a double mutant H205N/E127A, has been used to stabilize a covalent glycosyl-enzyme intermediate involving an unsubstituted sugar, permitting crystallographic analysis of the interactions between its 2-hydroxyl group and the enzyme.

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Year:  1998        PMID: 9731776     DOI: 10.1038/1852

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  11 in total

1.  Long-lived glycosyl-enzyme intermediate mimic produced by formate re-activation of a mutant endoglucanase lacking its catalytic nucleophile.

Authors:  J L Viladot; F Canals; X Batllori; A Planas
Journal:  Biochem J       Date:  2001-04-01       Impact factor: 3.857

2.  Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.

Authors:  Qun Wan; Jerry M Parks; B Leif Hanson; Suzanne Zoe Fisher; Andreas Ostermann; Tobias E Schrader; David E Graham; Leighton Coates; Paul Langan; Andrey Kovalevsky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

3.  How similar are enzyme active site geometries derived from quantum mechanical theozymes to crystal structures of enzyme-inhibitor complexes? Implications for enzyme design.

Authors:  Jason Dechancie; Fernando R Clemente; Adam J T Smith; Hakan Gunaydin; Yi-Lei Zhao; Xiyun Zhang; K N Houk
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

4.  A C-terminal proline-rich sequence simultaneously broadens the optimal temperature and pH ranges and improves the catalytic efficiency of glycosyl hydrolase family 10 ruminal xylanases.

Authors:  Zhongyuan Li; Xianli Xue; Heng Zhao; Peilong Yang; Huiying Luo; Junqi Zhao; Huoqing Huang; Bin Yao
Journal:  Appl Environ Microbiol       Date:  2014-03-21       Impact factor: 4.792

5.  Role of non-covalent enzyme-substrate interactions in the reaction catalysed by cellobiose phosphorylase from Cellulomonas uda.

Authors:  B Nidetzky; C Eis; M Albert
Journal:  Biochem J       Date:  2000-11-01       Impact factor: 3.857

6.  Epoxyalkyl glycosides of D-xylose and xylo-oligosaccharides are active-site markers of xylanases from glycoside hydrolase family 11, not from family 10.

Authors:  P Ntarima; W Nerinckx; K Klarskov; B Devreese; M K Bhat; J Van Beeumen; M Claeyssens
Journal:  Biochem J       Date:  2000-05-01       Impact factor: 3.857

7.  Engineering lower inhibitor affinities in β-D-xylosidase of Selenomonas ruminantium by site-directed mutagenesis of Trp145.

Authors:  Douglas B Jordan; Kurt Wagschal; Zhanmin Fan; Ling Yuan; Jay D Braker; Chamroeun Heng
Journal:  J Ind Microbiol Biotechnol       Date:  2011-04-29       Impact factor: 3.346

8.  Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase.

Authors:  Klaus Hövel; Dalia Shallom; Karsten Niefind; Valery Belakhov; Gil Shoham; Timor Baasov; Yuval Shoham; Dietmar Schomburg
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

9.  Molecular modeling and MM-PBSA free energy analysis of endo-1,4-β-xylanase from Ruminococcus albus 8.

Authors:  Dongling Zhan; Lei Yu; Hanyong Jin; Shanshan Guan; Weiwei Han
Journal:  Int J Mol Sci       Date:  2014-09-26       Impact factor: 5.923

10.  Understanding the Positional Binding and Substrate Interaction of a Highly Thermostable GH10 Xylanase from Thermotoga maritima by Molecular Docking.

Authors:  Jiangke Yang; Zhenggang Han
Journal:  Biomolecules       Date:  2018-07-30
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