Literature DB >> 11256951

Long-lived glycosyl-enzyme intermediate mimic produced by formate re-activation of a mutant endoglucanase lacking its catalytic nucleophile.

J L Viladot1, F Canals, X Batllori, A Planas.   

Abstract

The mutant E134A 1,3-1,4-beta-glucanase from Bacillus licheniformis, in which the catalytic nucleophilic residue has been removed by mutation to alanine, has its hydrolytic activity rescued by exogenous formate in a concentration-dependent manner. A long-lived alpha-glycosyl formate is detected and identified by (1)H-NMR and matrix-assisted laser desorption ionization-time-of-flight-MS. The intermediate is kinetically competent, since it is, at least partially, enzymically hydrolysed, and able to act as a glycosyl donor in transglycosylation reactions. This transient compound represents a true covalent glycosyl-enzyme intermediate mimic of the proposed covalent intermediate in the reaction mechanism of retaining glycosidases.

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Year:  2001        PMID: 11256951      PMCID: PMC1221714          DOI: 10.1042/0264-6021:3550079

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  32 in total

1.  Synthesis of 4-methylumbelliferyl-beta-D-glucan oligosaccharides as specific chromophoric substrates of (1-->3), (1-->4)-beta-D-glucan 4-glucanohydrolases.

Authors:  C Malet; J L Viladot; A Ochoa; B Gállego; C Brosa; A Planas
Journal:  Carbohydr Res       Date:  1995-09-08       Impact factor: 2.104

2.  A specific chromophoric substrate for activity assays of 1,3-1,4-beta-D-glucan 4-glucanohydrolases.

Authors:  C Malet; J Vallés; J Bou; A Planas
Journal:  J Biotechnol       Date:  1996-07-31       Impact factor: 3.307

3.  The pKa of the general acid/base carboxyl group of a glycosidase cycles during catalysis: a 13C-NMR study of bacillus circulans xylanase.

Authors:  L P McIntosh; G Hand; P E Johnson; M D Joshi; M Körner; L A Plesniak; L Ziser; W W Wakarchuk; S G Withers
Journal:  Biochemistry       Date:  1996-08-06       Impact factor: 3.162

4.  Mechanisms of cellulases and xylanases: a detailed kinetic study of the exo-beta-1,4-glycanase from Cellulomonas fimi.

Authors:  D Tull; S G Withers
Journal:  Biochemistry       Date:  1994-05-24       Impact factor: 3.162

5.  Mechanistic consequences of mutation of active site carboxylates in a retaining beta-1,4-glycanase from Cellulomonas fimi.

Authors:  A M MacLeod; D Tull; K Rupitz; R A Warren; S G Withers
Journal:  Biochemistry       Date:  1996-10-08       Impact factor: 3.162

6.  Mechanism of Agrobacterium beta-glucosidase: kinetic studies.

Authors:  J B Kempton; S G Withers
Journal:  Biochemistry       Date:  1992-10-20       Impact factor: 3.162

7.  Identification of glutamic acid 78 as the active site nucleophile in Bacillus subtilis xylanase using electrospray tandem mass spectrometry.

Authors:  S Miao; L Ziser; R Aebersold; S G Withers
Journal:  Biochemistry       Date:  1994-06-14       Impact factor: 3.162

8.  Binding energy and catalysis. Fluorinated and deoxygenated glycosides as mechanistic probes of Escherichia coli (lacZ) beta-galactosidase.

Authors:  J D McCarter; M J Adam; S G Withers
Journal:  Biochem J       Date:  1992-09-15       Impact factor: 3.857

9.  Mechanism of Agrobacterium beta-glucosidase: kinetic analysis of the role of noncovalent enzyme/substrate interactions.

Authors:  M N Namchuk; S G Withers
Journal:  Biochemistry       Date:  1995-12-12       Impact factor: 3.162

10.  Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis.

Authors:  A C Terwisscha van Scheltinga; S Armand; K H Kalk; A Isogai; B Henrissat; B W Dijkstra
Journal:  Biochemistry       Date:  1995-12-05       Impact factor: 3.162

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  4 in total

1.  Kinetic analysis using low-molecular mass xyloglucan oligosaccharides defines the catalytic mechanism of a Populus xyloglucan endotransglycosylase.

Authors:  Marc Saura-Valls; Régis Fauré; Sergi Ragàs; Kathleen Piens; Harry Brumer; Tuula T Teeri; Sylvain Cottaz; Hugues Driguez; Antoni Planas
Journal:  Biochem J       Date:  2006-04-01       Impact factor: 3.857

2.  Mutagenesis and mechanistic study of a glycoside hydrolase family 54 alpha-L-arabinofuranosidase from Trichoderma koningii.

Authors:  Chin-Feng Wan; Wei-Hong Chen; Cheng-Ta Chen; Margaret Dah-Tsyr Chang; Lee-Chiang Lo; Yaw-Kuen Li
Journal:  Biochem J       Date:  2007-01-15       Impact factor: 3.857

3.  Transferase and hydrolytic activities of the laminarinase from Rhodothermus marinus and its M133A, M133C, and M133W mutants.

Authors:  Kirill N Neustroev; Alexander M Golubev; Michael L Sinnott; Rainer Borriss; Martin Krah; Harry Brumer; Elena V Eneyskaya; Sergey Shishlyannikov; Konstantin A Shabalin; Viacheslav T Peshechonov; Vladimir G Korolev; Anna A Kulminskaya
Journal:  Glycoconj J       Date:  2006-11       Impact factor: 3.009

4.  Identification of the nucleophile catalytic residue of GH51 α-L-arabinofuranosidase from Pleurotus ostreatus.

Authors:  Antonella Amore; Alfonso Iadonisi; Florence Vincent; Vincenza Faraco
Journal:  AMB Express       Date:  2015-12-21       Impact factor: 3.298

  4 in total

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