Literature DB >> 9729787

Experiments and strategies for the assignment of fully 13C/15N-labelled polypeptides by solid state NMR.

S K Straus1, T Bremi, R R Ernst.   

Abstract

High-resolution heteronuclear NMR correlation experiments and strategies are proposed for the assignment of fully 13C/15N-labelled polypeptides in the solid state. By the combination of intra-residue and inter-residue 13C-15N correlation experiments with 13C-13C spin-diffusion studies, it becomes feasible to partially assign backbone and side-chain resonance in solid proteins. The performance of sequences using 15N instead of 13C detection is evaluated regarding sensitivity and resolution for a labelled dipeptide (L-Val-L-Phe). The techniques are used for a partial assignment of the 15N and 13C resonances in human ubiquitin.

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Year:  1998        PMID: 9729787     DOI: 10.1023/a:1008280716360

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  Assignment of the side-chain 1H and 13C resonances of interleukin-1 beta using double- and triple-resonance heteronuclear three-dimensional NMR spectroscopy.

Authors:  G M Clore; A Bax; P C Driscoll; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1990-09-04       Impact factor: 3.162

2.  Solid-state NMR studies of the prion protein H1 fragment.

Authors:  J Heller; A C Kolbert; R Larsen; M Ernst; T Bekker; M Baldwin; S B Prusiner; A Pines; D E Wemmer
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

3.  Amino-acid-type identification for deuterated proteins with a beta-carbon-edited HNCOCACB experiment.

Authors:  V Dötsch; H Matsuo; G Wagner
Journal:  J Magn Reson B       Date:  1996-07

4.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

5.  Chemical synthesis and expression of a cassette adapted ubiquitin gene.

Authors:  D J Ecker; M I Khan; J Marsh; T R Butt; S T Crooke
Journal:  J Biol Chem       Date:  1987-03-15       Impact factor: 5.157

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Secondary structure and location of a magainin analogue in synthetic phospholipid bilayers.

Authors:  D J Hirsh; J Hammer; W L Maloy; J Blazyk; J Schaefer
Journal:  Biochemistry       Date:  1996-10-01       Impact factor: 3.162

8.  Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein.

Authors:  A J Wand; J L Urbauer; R P McEvoy; R J Bieber
Journal:  Biochemistry       Date:  1996-05-14       Impact factor: 3.162

9.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

10.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

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  22 in total

1.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

2.  Assignment of amide proton signals by combined evaluation of HN, NN and HNCA MAS-NMR correlation spectra.

Authors:  Barth-Jan van Rossum; Federica Castellani; Jutta Pauli; Kristina Rehbein; J Hollander; Huub J M de Groot; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

Review 3.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

4.  Biosynthetic site-specific (13) C labeling of the light-harvesting 2 protein complex: a model for solid state NMR structure determination of transmembrane proteins.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

5.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

6.  Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy.

Authors:  Lichi Shi; Xiaohu Peng; Mumdooh A M Ahmed; Dale Edwards; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2008-04-11       Impact factor: 2.835

7.  The influence of internuclear spatial distribution and instrument noise on the precision of distances determined by solid state NMR of isotopically enriched proteins.

Authors:  John D Gehman; Eric K Paulson; Kurt W Zilm
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

8.  Beyond Structural Biology to Functional Biology: Solid-State NMR Experiments and Strategies for Understanding the M2 Proton Channel Conductance.

Authors:  Huajun Qin; Yimin Miao; Timothy A Cross; Riqiang Fu
Journal:  J Phys Chem B       Date:  2017-05-02       Impact factor: 2.991

9.  The NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope.

Authors:  Omry Morag; Nikolaos G Sgourakis; David Baker; Amir Goldbourt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-13       Impact factor: 11.205

10.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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