Literature DB >> 9724330

Sequencing of cDNA clones from the genetic map of tomato (Lycopersicon esculentum).

M W Ganal1, R Czihal, U Hannappel, D U Kloos, A Polley, H Q Ling.   

Abstract

The dense RFLP linkage map of tomato (Lycopersicon esculentum) contains >300 anonymous cDNA clones. Of those clones, 272 were partially or completely sequenced. The sequences were compared at the DNA and protein level to known genes in databases. For 57% of the clones, a significant match to previously described genes was found. The information will permit the conversion of those markers to STS markers and allow their use in PCR-based mapping experiments. Furthermore, it will facilitate the comparative mapping of genes across distantly related plant species by direct comparison of DNA sequences and map positions. [cDNA sequence data reported in this paper have been submitted to the EMBL database under accession nos. AA824695-AA825005 and the dbEST_Id database under accession nos. 1546519-1546862.]

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9724330      PMCID: PMC310761          DOI: 10.1101/gr.8.8.842

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  18 in total

1.  Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci.

Authors:  G B Martin; M W Ganal; S D Tanksley
Journal:  Mol Gen Genet       Date:  1992-05

2.  High density molecular linkage maps of the tomato and potato genomes.

Authors:  S D Tanksley; M W Ganal; J P Prince; M C de Vicente; M W Bonierbale; P Broun; T M Fulton; J J Giovannoni; S Grandillo; G B Martin
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

3.  Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector.

Authors:  H Shizuya; B Birren; U J Kim; V Mancino; T Slepak; Y Tachiiri; M Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

4.  Sequence-tagged sites (STSs) as standard landmarkers in the rice genome.

Authors:  T Inoue; H S Zhong; A Miyao; I Ashikawa; L Monna; S Fukuoka; N Miyadera; Y Nagamura; N Kurata; T Sasaki; Y Minobe
Journal:  Theor Appl Genet       Date:  1994-11       Impact factor: 5.699

5.  An improved method of partially digesting plant megabase DNA suitable for YAC cloning: application to the construction of a 5.5 genome equivalent YAC library of tomato.

Authors:  G Bonnema; J Hontelez; R Verkerk; Y Q Zhang; R van Daelen; A van Kammen; P Zabel
Journal:  Plant J       Date:  1996-01       Impact factor: 6.417

6.  A 300 kilobase interval genetic map of rice including 883 expressed sequences.

Authors:  N Kurata; Y Nagamura; K Yamamoto; Y Harushima; N Sue; J Wu; B A Antonio; A Shomura; T Shimizu; S Y Lin
Journal:  Nat Genet       Date:  1994-12       Impact factor: 38.330

7.  Comparative linkage maps of the rice and maize genomes.

Authors:  S Ahn; S D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-01       Impact factor: 11.205

Review 8.  The Arabidopsis thaliana cDNA sequencing projects.

Authors:  M Delseny; R Cooke; M Raynal; F Grellet
Journal:  FEBS Lett       Date:  1997-02-24       Impact factor: 4.124

9.  High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: a major fruit weight quantitative trait locus in tomato.

Authors:  K B Alpert; S D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

10.  Genetic and physical mapping of the lateral suppressor (ls) locus in tomato.

Authors:  K Schumacher; M Ganal; K Theres
Journal:  Mol Gen Genet       Date:  1995-03-20
View more
  10 in total

1.  Species and recombination effects on DNA variability in the tomato genus.

Authors:  E Baudry; C Kerdelhué; H Innan; W Stephan
Journal:  Genetics       Date:  2001-08       Impact factor: 4.562

2.  Messenger RNA-binding properties of nonpolysomal ribonucleoproteins from heat-stressed tomato cells

Authors: 
Journal:  Plant Physiol       Date:  1999-05       Impact factor: 8.340

3.  The relationship of nucleotide polymorphism, recombination rate and selection in wild tomato species.

Authors:  Kerstin Roselius; Wolfgang Stephan; Thomas Städler
Journal:  Genetics       Date:  2005-08-05       Impact factor: 4.562

4.  Inheritance and genetic mapping of tuber eye depth in cultivated diploid potatoes.

Authors:  Xiu-Qing Li; Hielke De Jong; Darlene M De Jong; Walter S De Jong
Journal:  Theor Appl Genet       Date:  2005-02-18       Impact factor: 5.699

5.  Characterization and mapping of RPi-ber, a novel potato late blight resistance gene from Solanum berthaultii.

Authors:  G M Rauscher; C D Smart; I Simko; M Bonierbale; H Mayton; A Greenland; W E Fry
Journal:  Theor Appl Genet       Date:  2006-01-10       Impact factor: 5.699

6.  Comparative microsatellite linkage analysis and genetic structure of two populations of F6 lines derived from Lycopersicon pimpinellifolium and L. cheesmanii.

Authors:  I Villalta; A Reina-Sánchez; J Cuartero; E A Carbonell; M J Asins
Journal:  Theor Appl Genet       Date:  2005-02-03       Impact factor: 5.699

7.  Genome mapping and molecular breeding of tomato.

Authors:  Majid R Foolad
Journal:  Int J Plant Genomics       Date:  2007

8.  Nucleotide polymorphism in the drought responsive gene Asr2 in wild populations of tomato.

Authors:  Mariano I Giombini; Nicolás Frankel; Norberto D Iusem; Esteban Hasson
Journal:  Genetica       Date:  2008-07-19       Impact factor: 1.082

9.  Fine mapping of the tomato I-3 gene for fusarium wilt resistance and elimination of a co-segregating resistance gene analogue as a candidate for I-3.

Authors:  M N Hemming; S Basuki; D J McGrath; B J Carroll; D A Jones
Journal:  Theor Appl Genet       Date:  2004-03-26       Impact factor: 5.699

10.  A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit.

Authors:  L Bermúdez; U Urias; D Milstein; L Kamenetzky; R Asis; A R Fernie; M A Van Sluys; F Carrari; M Rossi
Journal:  J Exp Bot       Date:  2008-06-13       Impact factor: 6.992

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.