Literature DB >> 9711501

Some pitfalls in curve-fitting and how to avoid them: a case in point.

R I Shrager1, R W Hendler.   

Abstract

When curve-fitting is used to support a complex nonlinear model containing several exponential terms, some of which have closely-spaced time constants, a particular burden of proof must be assumed. Most important, the uniqueness of the solution must be explored and discussed. Statistical tests for the degree of error and independence of the parameters should be provided, as well as information relating to the steps actually used in the fitting procedures. As an example of the need for the procedures we recommend in this communication, we have chosen an important case in point that has been published recently, and which deals with the kinetics of electron transfer from fully-reduced cytochrome oxidase to O2, analyzed by the method of SVD-based least squares. The problems we deal with in this case are applicable to a wide variety of other cases that involve curve-fitting to mathematical models.

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Year:  1998        PMID: 9711501     DOI: 10.1016/s0165-022x(98)00007-4

Source DB:  PubMed          Journal:  J Biochem Biophys Methods        ISSN: 0165-022X


  11 in total

1.  Simultaneous measurements of fast optical and proton current kinetics in the bacteriorhodopsin photocycle using an enhanced spectrophotometer.

Authors:  John W Kakareka; Paul D Smith; Thomas J Pohida; Richard W Hendler
Journal:  J Biochem Biophys Methods       Date:  2007-11-17

2.  Transient binding of CO to Cu(B) in cytochrome c oxidase is dynamically linked to structural changes around a carboxyl group: a time-resolved step-scan Fourier transform infrared investigation.

Authors:  Dirk Heitbrink; Håkan Sigurdson; Carsten Bolwien; Peter Brzezinski; Joachim Heberle
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

3.  The ability of actinic light to modify the bacteriorhodopsin photocycle revisited: heterogeneity vs photocooperativity.

Authors:  Richard W Hendler; Richard I Shrager; Curtis W Meuse
Journal:  Biochemistry       Date:  2008-04-19       Impact factor: 3.162

4.  Electrogenic proton-pumping capabilities of the m-fast and m-slow photocycles of bacteriorhodopsin.

Authors:  Richard W Hendler; Curtis W Meuse
Journal:  Biochemistry       Date:  2008-04-19       Impact factor: 3.162

5.  Quenching of chlorophyll triplet states by carotenoids in algal light-harvesting complexes related to fucoxanthin-chlorophyll protein.

Authors:  Petro Khoroshyy; David Bína; Zdenko Gardian; Radek Litvín; Jan Alster; Jakub Pšenčík
Journal:  Photosynth Res       Date:  2017-07-01       Impact factor: 3.573

6.  Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.

Authors:  Han N Ho; Daniel Zalami; Jürgen Köhler; Antoine M van Oijen; Harshad Ghodke
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

7.  Stray light correction in the optical spectroscopy of crystals.

Authors:  Richard W Hendler; Curtis W Meuse; Travis Gallagher; Joerg Labahn; Jan Kubicek; Paul D Smith; John W Kakareka
Journal:  Appl Spectrosc       Date:  2015-09       Impact factor: 2.388

8.  Time-resolved flow-flash FT-IR difference spectroscopy: the kinetics of CO photodissociation from myoglobin revisited.

Authors:  Michael Schleeger; Christoph Wagner; Michiel J Vellekoop; Bernhard Lendl; Joachim Heberle
Journal:  Anal Bioanal Chem       Date:  2009-06-12       Impact factor: 4.142

9.  Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin.

Authors:  Kazumasa Oda; Takashi Nomura; Takanori Nakane; Keitaro Yamashita; Keiichi Inoue; Shota Ito; Johannes Vierock; Kunio Hirata; Andrés D Maturana; Kota Katayama; Tatsuya Ikuta; Itsuki Ishigami; Tamaki Izume; Rie Umeda; Ryuun Eguma; Satomi Oishi; Go Kasuya; Takafumi Kato; Tsukasa Kusakizako; Wataru Shihoya; Hiroto Shimada; Tomoyuki Takatsuji; Mizuki Takemoto; Reiya Taniguchi; Atsuhiro Tomita; Ryoki Nakamura; Masahiro Fukuda; Hirotake Miyauchi; Yongchan Lee; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Tetsunari Kimura; Tatsuro Shimamura; Takaaki Fujiwara; Yasuaki Yamanaka; Shigeki Owada; Yasumasa Joti; Kensuke Tono; Ryuichiro Ishitani; Shigehiko Hayashi; Hideki Kandori; Peter Hegemann; So Iwata; Minoru Kubo; Tomohiro Nishizawa; Osamu Nureki
Journal:  Elife       Date:  2021-03-23       Impact factor: 8.140

10.  Quantum entanglement at ambient conditions in a macroscopic solid-state spin ensemble.

Authors:  Paul V Klimov; Abram L Falk; David J Christle; Viatcheslav V Dobrovitski; David D Awschalom
Journal:  Sci Adv       Date:  2015-11-20       Impact factor: 14.136

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