Literature DB >> 9705501

Detection of thymine [2+2] photodimer repair in DNA: selective reaction of KMnO4.

D Ramaiah1, T Koch, H Orum, G B Schuster.   

Abstract

The specific reaction of potassium permanganate with thymine in single-stranded DNA was employed to analyze thymine [2+2] dimer repair in DNA and in DNA/peptide nucleic acid hybrid duplexes. This simple and highly sensitive chemical assay is convenient for monitoring repair of thymine dimers in oligonucleotides.

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Year:  1998        PMID： 9705501      PMCID： PMC147792          DOI： 10.1093/nar/26.17.3940

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  1H NMR assignment and melting temperature study of cis-syn and trans-syn thymine dimer containing duplexes of d(CGTATTATGC).d(GCATAATACG).

Authors:  J S Taylor; D S Garrett; I R Brockie; D L Svoboda; J Telser
Journal:  Biochemistry       Date:  1990-09-18       Impact factor: 3.162

2.  Detection of intercalation-induced changes in DNA structure by reaction with diethyl pyrocarbonate or potassium permanganate. Evidence against the induction of Hoogsteen base pairing by echinomycin.

Authors:  C Jeppesen; P E Nielsen
Journal:  FEBS Lett       Date:  1988-04-11       Impact factor: 4.124

3.  The selective degradation of pyrimidines in nucleic acids by permanganate oxidation.

Authors:  H Hayatsu; T Ukita
Journal:  Biochem Biophys Res Commun       Date:  1967-11-30       Impact factor: 3.575

4.  Base-specific reactions useful for DNA sequencing: methylene blue--sensitized photooxidation of guanine and osmium tetraoxide modification of thymine.

Authors:  T Friedmann; D M Brown
Journal:  Nucleic Acids Res       Date:  1978-02       Impact factor: 16.971

5.  Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector.

Authors:  S K Banerjee; R B Christensen; C W Lawrence; J E LeClerc
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

6.  Photosensitized splitting of pyrimidine dimers.

Authors:  E Ben-Hur; I Rosenthal
Journal:  Photochem Photobiol       Date:  1970-03       Impact factor: 3.421

7.  Binding of Escherichia coli DNA photolyase to UV-irradiated DNA.

Authors:  G B Sancar; F W Smith; A Sancar
Journal:  Biochemistry       Date:  1985-04-09       Impact factor: 3.162

8.  Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

Authors:  B H Johnston; A Rich
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

9.  Pyrimidine-specific chemical reactions useful for DNA sequencing.

Authors:  C M Rubin; C W Schmid
Journal:  Nucleic Acids Res       Date:  1980-10-24       Impact factor: 16.971

10.  Osmium tetroxide: a new probe for site-specific distortions in supercoiled DNAs.

Authors:  G C Glikin; M Vojtískova; L Rena-Descalzi; E Palecek
Journal:  Nucleic Acids Res       Date:  1984-02-10       Impact factor: 16.971
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  3 in total

1.  Enzymatic reaction with unnatural substrates: DNA photolyase (Escherichia coli) recognizes and reverses thymine [2+2] dimers in the DNA strand of a DNA/PNA hybrid duplex.

Authors:  D Ramaiah; Y Kan; T Koch; H Orum; G B Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-27       Impact factor: 11.205

2.  Substrate binding to DNA photolyase studied by electron paramagnetic resonance spectroscopy.

Authors:  S Weber; G Richter; E Schleicher; A Bacher; K Möbius; C W Kay
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

3.  Thymine dimer-induced structural changes to the DNA duplex examined with reactive probes (†).

Authors:  Amy E Rumora; Katarzyna M Kolodziejczak; Anne Malhowski Wagner; Megan E Núñez
Journal:  Biochemistry       Date:  2008-12-09       Impact factor: 3.162
  3 in total

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