Literature DB >> 204911

Base-specific reactions useful for DNA sequencing: methylene blue--sensitized photooxidation of guanine and osmium tetraoxide modification of thymine.

T Friedmann, D M Brown.   

Abstract

Exposure of DNA to methylene blue and visible or ultraviolet light causes guanine-specific modification, and subsequent treatment with piperidine leads to chain cleavage at each guanine residue. Treatment of DNA with osmium tetraoxide in dilute pyridine leads to thymidine-specific modification, and subsequent treatment with piperidine leads to chain cleavage at the modified thymidine residues. Both reactions can be used in conjunction with other base specific modifications described by Maxam and Gilbert (1) for the determination of the nucleotide sequence in DNA.

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Year:  1978        PMID: 204911      PMCID: PMC342006          DOI: 10.1093/nar/5.2.615

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  THE DYE-SENSITIZED PHOTOOXIDATION OF PURINE AND PYRIMIDINE DERIVATIVES.

Authors:  M I SIMON; H VANVUNAKIS
Journal:  Arch Biochem Biophys       Date:  1964-04       Impact factor: 4.013

2.  PHOTOSENSITIZED REACTION OF POLYRIBONUCLEOTIDES. I. EFFECTS ON THEIR SUSCEPTIBILITY TO ENZYME DIGESTION AND THEIR ABILITY TO ACT AS SYNTHETIC MESSENGERS.

Authors:  M I SIMON; L GROSSMAN; H VANVUNAKIS
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

3.  The photodynamic reaction of methylene blue with deoxyribonucleic acid.

Authors:  M I SIMON; H VAN VUNAKIS
Journal:  J Mol Biol       Date:  1962-06       Impact factor: 5.469

4.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

5.  A comparative study of photodynamic oxidation and radiofrequency-discharge-generated 1O2 oxidation of guanosine.

Authors:  A Kornhauser; N I Krinsky; P K Huang; D C Clagett
Journal:  Photochem Photobiol       Date:  1973-07       Impact factor: 3.421

6.  Reactivity of purine and pyrimidine bases toward singlet oxygen.

Authors:  I Rosenthal; J N Pitts
Journal:  Biophys J       Date:  1971-11       Impact factor: 4.033

7.  Reactions between singlet oxygen and the constituents of nucleic acids. Importance of reactions in photodynamic processes.

Authors:  F R Hallett; B P Hallett; W Snipes
Journal:  Biophys J       Date:  1970-04       Impact factor: 4.033

8.  Studies on the photosensitized breakdown of guanosine by methylene blue.

Authors:  L A Waskell; K S Sastry; M P Gordon
Journal:  Biochim Biophys Acta       Date:  1966-10-24

9.  Selective degradation of thymidine and thymine deoxynucleotides.

Authors:  K Burton; W T Riley
Journal:  Biochem J       Date:  1966-01       Impact factor: 3.857

10.  Structure and function of Escherichia coli formylmethionine transfer RNA: loss of methionine acceptor activity by modification of a specific guanosine residue in the acceptor stem of formylmethionine transfer RNA from Escherichia coli.

Authors:  L H Schulman
Journal:  Proc Natl Acad Sci U S A       Date:  1972-12       Impact factor: 11.205

  10 in total
  33 in total

1.  DNA synthesis blocking lesions induced by singlet oxygen are targeted to deoxyguanosines.

Authors:  D T Ribeiro; F Bourre; A Sarasin; P Di Mascio; C F Menck
Journal:  Nucleic Acids Res       Date:  1992-05-25       Impact factor: 16.971

2.  Photooxidation of d(TpG) by phthalocyanines and riboflavin. Isolation and characterization of dinucleoside monophosphates containing the 4R* and 4S* diastereoisomers of 4,8-dihydro-4-hydroxy-8-oxo-2'-deoxy-guanosine.

Authors:  G W Buchko; J Cadet; M Berger; J L Ravanat
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

3.  Hairpin and parallel quartet structures for telomeric sequences.

Authors:  P Balagurumoorthy; S K Brahmachari; D Mohanty; M Bansal; V Sasisekharan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

4.  Methylene blue photosensitised strand cleavage of DNA: effects of dye binding and oxygen.

Authors:  C OhUigin; D J McConnell; J M Kelly; W J van der Putten
Journal:  Nucleic Acids Res       Date:  1987-09-25       Impact factor: 16.971

5.  Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase.

Authors:  T A Rosenquist; D O Zharkov; A P Grollman
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-08       Impact factor: 11.205

6.  The coherence of synthetic telomeres.

Authors:  O L Acevedo; L A Dickinson; T J Macke; C A Thomas
Journal:  Nucleic Acids Res       Date:  1991-06-25       Impact factor: 16.971

7.  Detection of thymine [2+2] photodimer repair in DNA: selective reaction of KMnO4.

Authors:  D Ramaiah; T Koch; H Orum; G B Schuster
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

8.  A novel uracil-DNA glycosylase family related to the helix-hairpin-helix DNA glycosylase superfamily.

Authors:  Ji Hyung Chung; Eun Kyoung Im; Hyun-Young Park; Jun Hye Kwon; Seahyoung Lee; Jaewon Oh; Ki-Chul Hwang; Jong Ho Lee; Yangsoo Jang
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

9.  Photooxidation of d(TpG) by riboflavin and methylene blue. Isolation and characterization of thymidylyl-(3',5')-2-amino-5-[(2-deoxy-beta-D- erythro-pentofuranosyl)amino]-4H-imidazol-4-one and its primary decomposition product thymidylyl-(3',5')-2,2-diamino-4-[(2-deoxy-beta-D- erythro-pentofuranosyl)amino]-5(2H)-oxazolone.

Authors:  G W Buchko; J Cadet; B Morin; M Weinfeld
Journal:  Nucleic Acids Res       Date:  1995-10-11       Impact factor: 16.971

10.  The intron boundaries and flanking rRNA coding sequences of Calliphora erythrocephala rDNA.

Authors:  V L Smith; K Beckingham
Journal:  Nucleic Acids Res       Date:  1984-02-10       Impact factor: 16.971

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