Literature DB >> 9697298

Osmotic compaction of supercoiled DNA into a bacterial nucleoid.

T Odijk1.   

Abstract

A theory is presented of the phase separation of supercoiled DNA into a nucleoid in a bacterial cell. The suspension consists of DNA interacting with globular proteins in excess salt. A cross virial between DNA and a protein is computed as well as the DNA self-energy arising from excluded volume. The cellular parameters of Escherichia coli would appear to be compatible with the thermodynamic equilibrium derived theoretically. The state of superhelical DNA in the nucleoid could be liquid crystalline and rippled.

Entities:  

Mesh:

Substances:

Year:  1998        PMID: 9697298     DOI: 10.1016/s0301-4622(98)00115-x

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  36 in total

1.  Electrostatic-undulatory theory of plectonemically supercoiled DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

2.  Compaction of single DNA molecules induced by binding of integration host factor (IHF).

Authors:  B M Ali; R Amit; I Braslavsky; A B Oppenheim; O Gileadi; J Stavans
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

3.  Subdiffraction-limit study of Kaede diffusion and spatial distribution in live Escherichia coli.

Authors:  Somenath Bakshi; Benjamin P Bratton; James C Weisshaar
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

4.  Crowding and confinement effects on protein diffusion in vivo.

Authors:  Michael C Konopka; Irina A Shkel; Scott Cayley; M Thomas Record; James C Weisshaar
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

5.  DNA supercoiling by gyrase is linked to nucleoid compaction.

Authors:  Rogier Stuger; Conrad L Woldringh; Coen C van der Weijden; Norbert O E Vischer; Barbara M Bakker; Rob J M van Spanning; Jacky L Snoep; Hans V Westerhoff
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

6.  Aggregation and adsorption at the air-water interface of bacteriophage phiX174 single-stranded DNA.

Authors:  C Douarche; J-L Sikorav; A Goldar
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

7.  Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion.

Authors:  Julio E Cabrera; Cedric Cagliero; Selwyn Quan; Catherine L Squires; Ding Jun Jin
Journal:  J Bacteriol       Date:  2009-04-24       Impact factor: 3.490

8.  Simulating the entropic collapse of coarse-grained chromosomes.

Authors:  Tyler N Shendruk; Martin Bertrand; Hendrick W de Haan; James L Harden; Gary W Slater
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

9.  Cytoplasmic protein mobility in osmotically stressed Escherichia coli.

Authors:  Michael C Konopka; Kem A Sochacki; Benjamin P Bratton; Irina A Shkel; M Thomas Record; James C Weisshaar
Journal:  J Bacteriol       Date:  2008-10-24       Impact factor: 3.490

Review 10.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.