Literature DB >> 9671819

Characterization of whole genome radiation hybrid mapping resources for non-mammalian vertebrates.

C Kwok1, R M Korn, M E Davis, D W Burt, R Critcher, L McCarthy, B H Paw, L I Zon, P N Goodfellow, K Schmitt.   

Abstract

Radiation hybrid panels are already available for genome mapping in human and mouse. In this study we have used two model organisms (chicken and zebrafish) to show that hybrid panels that contain a full complement of the donor genome can be generated by fusion to hamster cells. The quality of the resulting hybrids has been assessed using PCR and FISH. We confirmed the utility of our panels by establishing the percentage of donor DNA present in the hybrids. Our hybrid resources will allow inexpensive gene mapping and we expect that this technology can be transferred to many other species. Such successes are providing the basis for a new era of mapping tools, in the form of whole genome radiation hybrid panels, and are opening new possibilities for systematic genome analysis in the animal genetics community.

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Year:  1998        PMID: 9671819      PMCID: PMC147736          DOI: 10.1093/nar/26.15.3562

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  A genetic linkage map for the zebrafish.

Authors:  J H Postlethwait; S L Johnson; C N Midson; W S Talbot; M Gates; E W Ballinger; D Africa; R Andrews; T Carl; J S Eisen
Journal:  Science       Date:  1994-04-29       Impact factor: 47.728

2.  CpG islands of chicken are concentrated on microchromosomes.

Authors:  H A McQueen; J Fantes; S H Cross; V H Clark; A L Archibald; A P Bird
Journal:  Nat Genet       Date:  1996-03       Impact factor: 38.330

3.  An STS-based map of the human genome.

Authors:  T J Hudson; L D Stein; S S Gerety; J Ma; A B Castle; J Silva; D K Slonim; R Baptista; L Kruglyak; S H Xu; X Hu; A M Colbert; C Rosenberg; M P Reeve-Daly; S Rozen; L Hui; X Wu; C Vestergaard; K M Wilson; J S Bae; S Maitra; S Ganiatsas; C A Evans; M M DeAngelis; K A Ingalls; R W Nahf; L T Horton; M O Anderson; A J Collymore; W Ye; V Kouyoumjian; I S Zemsteva; J Tam; R Devine; D F Courtney; M T Renaud; H Nguyen; T J O'Connor; C Fizames; S Fauré; G Gyapay; C Dib; J Morissette; J B Orlin; B W Birren; N Goodman; J Weissenbach; T L Hawkins; S Foote; D C Page; E S Lander
Journal:  Science       Date:  1995-12-22       Impact factor: 47.728

4.  Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate.

Authors:  M C Mullins; M Hammerschmidt; P Haffter; C Nüsslein-Volhard
Journal:  Curr Biol       Date:  1994-03-01       Impact factor: 10.834

5.  Multipoint radiation hybrid mapping: comparison of methods, sample size requirements, and optimal study characteristics.

Authors:  K L Lunetta; M Boehnke
Journal:  Genomics       Date:  1994-05-01       Impact factor: 5.736

6.  Microsatellite-centromere mapping in the zebrafish (Danio rerio).

Authors:  E J Kauffman; E E Gestl; D J Kim; C Walker; J M Hite; G Yan; P K Rogan; S L Johnson; K C Cheng
Journal:  Genomics       Date:  1995-11-20       Impact factor: 5.736

7.  Loss of human genetic markers in man--Chinese hamster somatic cell hybrids.

Authors:  A Westerveld; R P Visser; P Meera Khan; D Bootsma
Journal:  Nat New Biol       Date:  1971-11-03

Review 8.  Chicken genome mapping: a new era in avian genetics.

Authors:  D W Burt; N Bumstead; J J Bitgood; F A Ponce de Leon; L B Crittenden
Journal:  Trends Genet       Date:  1995-05       Impact factor: 11.639

9.  Stable transfer of zebrafish chromosome segments into mouse cells.

Authors:  M Ekker; M D Speevak; C C Martin; L Joly; G Giroux; M Chevrette
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

10.  A reference cross DNA panel for zebrafish (Danio rerio) anchored with simple sequence length polymorphisms.

Authors:  E W Knapik; A Goodman; O S Atkinson; C T Roberts; M Shiozawa; C U Sim; S Weksler-Zangen; M R Trolliet; C Futrell; B A Innes; G Koike; M G McLaughlin; L Pierre; J S Simon; E Vilallonga; M Roy; P W Chiang; M C Fishman; W Driever; H J Jacob
Journal:  Development       Date:  1996-12       Impact factor: 6.868

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  18 in total

1.  Radiation hybrid mapping of the zebrafish genome.

Authors:  N A Hukriede; L Joly; M Tsang; J Miles; P Tellis; J A Epstein; W B Barbazuk; F N Li; B Paw; J H Postlethwait; T J Hudson; L I Zon; J D McPherson; M Chevrette; I B Dawid; S L Johnson; M Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

Review 2.  Zebrafish genetics: the enigma of arrival.

Authors:  M C Fishman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

3.  Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.

Authors:  Mireille Morisson; Carine Jiguet-Jiglaire; Sophie Leroux; Thomas Faraut; Suzanne Bardes; Katia Feve; Carine Genet; Frédérique Pitel; Denis Milan; Alain Vignal
Journal:  Mamm Genome       Date:  2004-09       Impact factor: 2.957

4.  The repertoire of Na,K-ATPase alpha and beta subunit genes expressed in the zebrafish, Danio rerio.

Authors:  S J Rajarao; V A Canfield; M A Mohideen; Y L Yan; J H Postlethwait; K C Cheng; R Levenson
Journal:  Genome Res       Date:  2001-07       Impact factor: 9.043

5.  Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome.

Authors:  Wenxiang Gao; Z Jeffrey Chen; John Z Yu; Russell J Kohel; James E Womack; David M Stelly
Journal:  Mol Genet Genomics       Date:  2005-12-16       Impact factor: 3.291

6.  Topoisomerase IIbeta is required for lamina-specific targeting of retinal ganglion cell axons and dendrites.

Authors:  Linda M Nevin; Tong Xiao; Wendy Staub; Herwig Baier
Journal:  Development       Date:  2011-06       Impact factor: 6.868

7.  Gata5 is required for the development of the heart and endoderm in zebrafish.

Authors:  J F Reiter; J Alexander; A Rodaway; D Yelon; R Patient; N Holder; D Y Stainier
Journal:  Genes Dev       Date:  1999-11-15       Impact factor: 11.361

8.  Identification of zebrafish A2 adenosine receptors and expression in developing embryos.

Authors:  Wendy Boehmler; Jessica Petko; Matthew Woll; Colleen Frey; Bernard Thisse; Christine Thisse; Victor A Canfield; Robert Levenson
Journal:  Gene Expr Patterns       Date:  2008-12-03       Impact factor: 1.224

9.  Wide-cross whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.).

Authors:  Wenxiang Gao; Z Jeffrey Chen; John Z Yu; Dwaine Raska; Russell J Kohel; James E Womack; David M Stelly
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

10.  The Irx gene family in zebrafish: genomic structure, evolution and initial characterization of irx5b.

Authors:  Carmen Gloria Feijóo; Miguel Manzanares; Elisa de la Calle-Mustienes; José Luis Gómez-Skarmeta; Miguel L Allende
Journal:  Dev Genes Evol       Date:  2004-04-03       Impact factor: 0.900

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