Literature DB >> 9671050

Identification of two cis-acting elements that independently regulate the length of poly(A) on Xenopus albumin pre-mRNA.

J Das Gupta1, H Gu, E Chernokalskaya, X Gao, D R Schoenberg.   

Abstract

Unlike most eukaryotic mRNAs studied to date, Xenopus serum albumin mRNA has a short (17-residue), discrete poly(A) tail. We recently reported that this short poly(A) tail results from regulation of the length of poly(A) on albumin pre-mRNA. The purpose of the present study was to locate the cis-acting element responsible for this, the poly(A)-limiting element or PLE. An albumin minigene consisting of albumin cDNA joined in exon 13 to the 3' end of the albumin gene produced mRNA with <20 nt poly(A) when transfected into mouse fibroblasts. This result indicates both that cis-acting sequences that regulate poly(A) length are within this construct, and that nuclear regulation of poly(A) length is conserved between vertebrates. Poly(A) length regulation was retained after replacing the terminal 53 bp and 3' flanking region of the albumin gene with a synthetic polyadenylation element (SPA). Conversely, fusing albumin gene sequence spanning the terminal 53 bp of the albumin gene and 3' flanking sequence onto the human beta-globin gene yielded globin mRNA with a 200-residue poly(A)tail. These data indicate that the PLE resides upstream of the sequence elements involved in albumin pre-mRNA 3' processing. Poly(A) length regulation was restored upon fusing a segment bearing albumin intron 14, exon 15, and 3' flanking sequence onto the beta-globin gene. We demonstrate that exon 15 contains two PLEs that can act independently to regulate the length of poly(A).

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Year:  1998        PMID: 9671050      PMCID: PMC1369657          DOI: 10.1017/s1355838298971837

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  34 in total

1.  The cap and the 3' splice site similarly affect polyadenylation efficiency.

Authors:  C Cooke; J C Alwine
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

2.  Cell-cycle related regulation of poly(A) polymerase by phosphorylation.

Authors:  D F Colgan; K G Murthy; C Prives; J L Manley
Journal:  Nature       Date:  1996-11-21       Impact factor: 49.962

3.  Regulated nuclear polyadenylation of Xenopus albumin pre-mRNA.

Authors:  M N Rao; E Chernokalskaya; D R Schoenberg
Journal:  Nucleic Acids Res       Date:  1996-10-15       Impact factor: 16.971

4.  Definition of an efficient synthetic poly(A) site.

Authors:  N Levitt; D Briggs; A Gil; N J Proudfoot
Journal:  Genes Dev       Date:  1989-07       Impact factor: 11.361

5.  EDEN and EDEN-BP, a cis element and an associated factor that mediate sequence-specific mRNA deadenylation in Xenopus embryos.

Authors:  L Paillard; F Omilli; V Legagneux; T Bassez; D Maniey; H B Osborne
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

6.  Extranuclear estrogen-regulated destabilization of Xenopus laevis serum albumin mRNA.

Authors:  D R Schoenberg; J E Moskaitis; L H Smith; R L Pastori
Journal:  Mol Endocrinol       Date:  1989-05

7.  Multiple functions for the poly(A)-binding protein in mRNA decapping and deadenylation in yeast.

Authors:  G Caponigro; R Parker
Journal:  Genes Dev       Date:  1995-10-01       Impact factor: 11.361

8.  Complex alternative RNA processing generates an unexpected diversity of poly(A) polymerase isoforms.

Authors:  W Zhao; J L Manley
Journal:  Mol Cell Biol       Date:  1996-05       Impact factor: 4.272

9.  Interaction between the U1 snRNP-A protein and the 160-kD subunit of cleavage-polyadenylation specificity factor increases polyadenylation efficiency in vitro.

Authors:  C S Lutz; K G Murthy; N Schek; J P O'Connor; J L Manley; J C Alwine
Journal:  Genes Dev       Date:  1996-02-01       Impact factor: 11.361

10.  Transcriptional and post-transcriptional inhibition of albumin gene expression by estrogen in Xenopus liver.

Authors:  A T Riegel; M B Martin; D R Schoenberg
Journal:  Mol Cell Endocrinol       Date:  1986-03       Impact factor: 4.102

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  13 in total

Review 1.  Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.

Authors:  J Zhao; L Hyman; C Moore
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

2.  U2AF modulates poly(A) length control by the poly(A)-limiting element.

Authors:  Haidong Gu; Daniel R Schoenberg
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  The poly(A)-limiting element enhances mRNA accumulation by increasing the efficiency of pre-mRNA 3' processing.

Authors:  Jing Peng; Elizabeth L Murray; Daniel R Schoenberg
Journal:  RNA       Date:  2005-05-04       Impact factor: 4.942

4.  Assays for determining poly(A) tail length and the polarity of mRNA decay in mammalian cells.

Authors:  Elizabeth L Murray; Daniel R Schoenberg
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

5.  mRNA with a <20-nt poly(A) tail imparted by the poly(A)-limiting element is translated as efficiently in vivo as long poly(A) mRNA.

Authors:  Jing Peng; Daniel R Schoenberg
Journal:  RNA       Date:  2005-05-31       Impact factor: 4.942

6.  The poly(A)-limiting element is a conserved cis-acting sequence that regulates poly(A) tail length on nuclear pre-mRNAs.

Authors:  H Gu; J Das Gupta; D R Schoenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

7.  Position and sequence requirements for poly(A) length regulation by the poly(A) limiting element.

Authors:  J D Gupta; H Gu; D R Schoenberg
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

8.  Endonuclease-mediated mRNA decay requires tyrosine phosphorylation of polysomal ribonuclease 1 (PMR1) for the targeting and degradation of polyribosome-bound substrate mRNA.

Authors:  Feng Yang; Yong Peng; Daniel R Schoenberg
Journal:  J Biol Chem       Date:  2004-09-16       Impact factor: 5.157

9.  Identification of cytoplasmic capping targets reveals a role for cap homeostasis in translation and mRNA stability.

Authors:  Chandrama Mukherjee; Deepak P Patil; Brian A Kennedy; Baskar Bakthavachalu; Ralf Bundschuh; Daniel R Schoenberg
Journal:  Cell Rep       Date:  2012-08-23       Impact factor: 9.423

10.  Poly(A) polymerase-based poly(A) length assay.

Authors:  Deepak P Patil; Baskar Bakthavachalu; Daniel R Schoenberg
Journal:  Methods Mol Biol       Date:  2014
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