Literature DB >> 9649405

High-resolution, high-pressure NMR studies of proteins.

J Jonas1, L Ballard, D Nash.   

Abstract

Advanced high-resolution NMR spectroscopy, including two-dimensional NMR techniques, combined with high pressure capability, represents a powerful new tool in the study of proteins. This contribution is organized in the following way. First, the specialized instrumentation needed for high-pressure NMR experiments is discussed, with specific emphasis on the design features and performance characteristics of a high-sensitivity, high-resolution, variable-temperature NMR probe operating at 500 MHz and at pressures of up to 500 MPa. An overview of several recent studies using 1D and 2D high-resolution, high-pressure NMR spectroscopy to investigate the pressure-induced reversible unfolding and pressure-assisted cold denaturation of lysozyme, ribonuclease A, and ubiquitin is presented. Specifically, the relationship between the residual secondary structure of pressure-assisted, cold-denatured states and the structure of early folding intermediates is discussed.

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Year:  1998        PMID: 9649405      PMCID: PMC1299717          DOI: 10.1016/S0006-3495(98)77532-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Two-dimensional 1H NMR study of human ubiquitin: a main chain directed assignment and structure analysis.

Authors:  D L Di Stefano; A J Wand
Journal:  Biochemistry       Date:  1987-11-17       Impact factor: 3.162

2.  Structure of a hydrophobically collapsed intermediate on the conformational folding pathway of ribonuclease A probed by hydrogen-deuterium exchange.

Authors:  W A Houry; H A Scheraga
Journal:  Biochemistry       Date:  1996-09-10       Impact factor: 3.162

Review 3.  Intermediates in the folding reactions of small proteins.

Authors:  P S Kim; R L Baldwin
Journal:  Annu Rev Biochem       Date:  1990       Impact factor: 23.643

4.  Structure of the pressure-assisted cold denatured state of ubiquitin.

Authors:  D P Nash; J Jonas
Journal:  Biochem Biophys Res Commun       Date:  1997-09-18       Impact factor: 3.575

Review 5.  Structures of folding intermediates.

Authors:  O B Ptitsyn
Journal:  Curr Opin Struct Biol       Date:  1995-02       Impact factor: 6.809

Review 6.  The effect of high pressure upon proteins and other biomolecules.

Authors:  G Weber; H G Drickamer
Journal:  Q Rev Biophys       Date:  1983-02       Impact factor: 5.318

7.  3D structure of bovine pancreatic ribonuclease A in aqueous solution: an approach to tertiary structure determination from a small basis of 1H NMR NOE correlations.

Authors:  M Rico; J Santoro; C González; M Bruix; J L Neira; J L Nieto; J Herranz
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

Review 8.  Amide hydrogen exchange in a highly denatured state. Hen egg-white lysozyme in urea.

Authors:  M Buck; S E Radford; C M Dobson
Journal:  J Mol Biol       Date:  1994-04-01       Impact factor: 5.469

9.  Cold denaturation of barstar: 1H, 15N and 13C NMR assignment and characterisation of residual structure.

Authors:  K B Wong; S M Freund; A R Fersht
Journal:  J Mol Biol       Date:  1996-06-21       Impact factor: 5.469

10.  Heat and cold denatured states of monomeric lambda repressor are thermodynamically and conformationally equivalent.

Authors:  G S Huang; T G Oas
Journal:  Biochemistry       Date:  1996-05-21       Impact factor: 3.162

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  12 in total

1.  DNA tightens the dimeric DNA-binding domain of human papillomavirus E2 protein without changes in volume.

Authors:  L M Lima; D Foguel; J L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Comparative Fourier transform infrared spectroscopy study of cold-, pressure-, and heat-induced unfolding and aggregation of myoglobin.

Authors:  Filip Meersman; László Smeller; Karel Heremans
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

4.  The enzyme horseradish peroxidase is less compressible at higher pressures.

Authors:  László Smeller; Judit Fidy
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

5.  The cold denatured state of the C-terminal domain of protein L9 is compact and contains both native and non-native structure.

Authors:  Bing Shan; Sebastian McClendon; Carla Rospigliosi; David Eliezer; Daniel P Raleigh
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

6.  Pressure-induced unfolding of the molten globule of all-Ala alpha-lactalbumin.

Authors:  Michael W Lassalle; Hua Li; Hiroaki Yamada; Kazuyuki Akasaka; Christina Redfield
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

7.  Secondary-structure analysis of denatured proteins by vacuum-ultraviolet circular dichroism spectroscopy.

Authors:  Koichi Matsuo; Yoshie Sakurada; Ryuta Yonehara; Mikio Kataoka; Kunihiko Gekko
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

8.  Understanding the alpha-helix to coil transition in polypeptides using network rigidity: predicting heat and cold denaturation in mixed solvent conditions.

Authors:  Donald J Jacobs; Gregory G Wood
Journal:  Biopolymers       Date:  2004-09       Impact factor: 2.505

9.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

10.  The Complex Energy Landscape of the Protein IscU.

Authors:  Jameson R Bothe; Marco Tonelli; Ibrahim K Ali; Ziqi Dai; Ronnie O Frederick; William M Westler; John L Markley
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

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